PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G30710.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CAMTA
Protein Properties Length: 853aa    MW: 96990.3 Da    PI: 7.7922
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G30710.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1174.81.2e-54151331118
             CG-1   1 llke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenpt 93 
                      l++e k+rwlk++e+++iL+n++++ +t++++++p+sg+++L+nr+++ryfr+DGy+w+kkk+gkt+ E+he+LKv++v++l+cyYah+++n+t
  OPUNC01G30710.1  15 LHQEvKSRWLKPKEVLQILQNHDRFIITHKTPHKPPSGAWFLFNRRVLRYFRNDGYEWRKKKNGKTIAEAHERLKVDNVDALNCYYAHADKNST 108
                      567889**************************************************************************************** PP

             CG-1  94 fqrrcywlLeeelekivlvhylevk 118
                      fqrr+yw+L+ ++++iv+vhy++v+
  OPUNC01G30710.1 109 FQRRIYWMLDPAYDHIVFVHYRDVQ 133
                      **********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143777.93212138IPR005559CG-1 DNA-binding domain
SMARTSM010764.6E-6915133IPR005559CG-1 DNA-binding domain
PfamPF038591.1E-4819132IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.101.8E-5316402IPR013783Immunoglobulin-like fold
SuperFamilySSF812969.6E-14317400IPR014756Immunoglobulin E-set
CDDcd002041.56E-10492614No hitNo description
PfamPF136371.5E-9524576No hitNo description
SuperFamilySSF484031.87E-15526617IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.255527587IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.202.2E-16527619IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008811.541555587IPR002110Ankyrin repeat
SMARTSM002481.9E-4555584IPR002110Ankyrin repeat
SMARTSM00015440671693IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0037716738IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.236717746IPR000048IQ motif, EF-hand binding site
PfamPF006120.014718737IPR000048IQ motif, EF-hand binding site
SMARTSM000158.7739761IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.096740768IPR000048IQ motif, EF-hand binding site
PfamPF006120.083742761IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 853 aa     Download sequence    Send to blast
MQQQQQQQGF DTHRLHQEVK SRWLKPKEVL QILQNHDRFI ITHKTPHKPP SGAWFLFNRR  60
VLRYFRNDGY EWRKKKNGKT IAEAHERLKV DNVDALNCYY AHADKNSTFQ RRIYWMLDPA  120
YDHIVFVHYR DVQEGSISVS ALNDSSTSNQ NGSASRAEAQ SSPRLTSELF APCVNSCSPG  180
SAEEVSSQIM AINNETNSGS QPDWIQHCNQ AALRKLKVQL SLEDKEDRDV DAKDIPSNSE  240
PITVYGIQNE EPGTCRNLVD IFNGLEFSKE NHPEETGLPF SSTIDVLKNS DTWLEEDQIE  300
AILQSASMTL TVNQWFNIRE VSPEWSYCSE STKVIIAGDF LRDPSHGSWA ILFGDVKVPA  360
EIVQQGVIRC HTPCLDARKV TMYLIDENDK ACSEARQFEF HNKPTKSVVC ENRKPCREVH  420
ESELHQRPTE SKNELLLLFY YVQLLFNGHV SEQFLKFGLP FPNLEYRRQV SPSEIMKGAS  480
EQLNRESAVN CVMEVLLNSK FEEWLLSKYE QNSEGNHFLP RQYHGVIHTI AALGYNWALK  540
LLLNSGVLVN YRDANGWTAL HWAARFGREE TVVLLLDAGA AAGALSDPTA QDPAAKTPSS  600
VASAYGFKGL SAYLSEAELT AHLHSLESKE NGGSGDQISR VVDRISDTSA NAQSGRDDQL  660
ALKESLGAIR NAVQAAGRIQ TAFRIFSFRK KQQAGLQSRD NHIISIREVG AASHGKLEKA  720
ALSIQKNFRC WKKRKEFLKI RKDVIKIQAR VRAHQQHNKY KELLRSVGIL EKVMLRWYRK  780
GVGLRGFHPG AMAMPIDEED EDDIAKVFRK QRVETALNEA VSRVSSIIDS PVARQQYRRM  840
LEMHQQKKDD NEK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0689320.0AK068932.1 Oryza sativa Japonica Group cDNA clone:J023002D02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649561.10.0calmodulin-binding transcription activator 4 isoform X2
TrEMBLA0A0E0JNZ20.0A0A0E0JNZ2_ORYPU; Uncharacterized protein
STRINGOPUNC01G30710.20.0(Oryza punctata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.11e-106Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains