PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G31580.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LBD
Protein Properties Length: 249aa    MW: 26027.3 Da    PI: 7.886
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G31580.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260109.23.1e-34421571100
           DUF260   1 aCaaCkvlrrkCakdCvlapyf................paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavg 78 
                      +C aCk+lrr+C+++Cv+ap+f                 ++ +++fa+vh++FGasnv kll++lp   r+da+++++yeA+ar+ dPvyG+vg
  OPUNC01G31580.1  42 PCGACKFLRRRCVPGCVFAPHFsgcggsgvgagvggrgRERGAAEFAAVHRVFGASNVAKLLSRLPAALRRDAARTVCYEAQARIADPVYGSVG 135
                      7*********************************998555559*************************************************** PP

           DUF260  79 vilklqqqleqlkaelallkee 100
                      +il+lq+q++ l+ +l++l+++
  OPUNC01G31580.1 136 TILALQHQVSLLQGQLSVLESQ 157
                      ****************999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089120.70441158IPR004883Lateral organ boundaries, LOB
PfamPF031954.9E-3842155IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MHAAQPPGNK RRGSGGAAAV ERPASGAGLQ AEEASSAGPG APCGACKFLR RRCVPGCVFA  60
PHFSGCGGSG VGAGVGGRGR ERGAAEFAAV HRVFGASNVA KLLSRLPAAL RRDAARTVCY  120
EAQARIADPV YGSVGTILAL QHQVSLLQGQ LSVLESQLFN LRVALASTHP DTPPQHFVVL  180
QPAHSAASTP NQVVVNYDDL PHAVDFMDAE PAALRGLESL QLSQPLQREE DEGHRDMNLF  240
SDSVGQRQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-33351594112LOB family transfactor Ramosa2.1
5ly0_B5e-33351594112LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2424680.0AK242468.1 Oryza sativa Japonica Group cDNA, clone: J080302F02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630092.11e-147LOB domain-containing protein 20
SwissprotQ9SRV35e-46LBD20_ARATH; LOB domain-containing protein 20
TrEMBLA0A0E0JP961e-178A0A0E0JP96_ORYPU; Uncharacterized protein
STRINGOPUNC01G31580.11e-178(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140852526
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.14e-17LOB domain-containing protein 20