PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC01G31740.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 313aa MW: 34283.8 Da PI: 5.1301

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC01G31740.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	22.6	1.9e-07	121	152	4	37
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS- CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskK 37 h +rEr RR+r+ ++++ L+ +lP+ as s K OPUNC01G31740.1 121 RHIMRERLRRERLSQGYADLQAILPTgAS---SSK 152 599***********************884...443 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.96E-9	116	203	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	10.728	117	186	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.4E-7	119	203	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.1E-4	121	152	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
MEDDDVDHPF YFAHDAATGV DVVDDEELLA SLGFLLPPPL ATVQSAFAAY QSSMTESDLS 60 RRFRSSPANV HRRMHEYLRS IDDGAGGAGV TVEMQVEADE RAVEQQQVAP IGSGGGSARF 120 RHIMRERLRR ERLSQGYADL QAILPTGASS SKVVMIHQKF KITPALINYG GKNYIVGAAA 180 SYIRELEGRK GWLRARNEEM ERTTPKPGAG MVVKVRAETE FGSTLDVFEA VLRRLKAMDE 240 LQVTVIQSCF GAGGMWMDVA VESKAKVSSR EVDKAITNAL EELQEIKSSC LQDPISSGMS 300 FSCQVESGVL LMS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	126	131	RLRRER

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP003265	1e-113	AP003265.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0490D09.
GenBank	AP014957	1e-113	AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBank	CP012609	1e-113	CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015635057.1	1e-126	transcription factor BHLH148-like
TrEMBL	A0A0E0JPD1	0.0	A0A0E0JPD1_ORYPU; Uncharacterized protein
STRING	OPUNC01G31740.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12730	24	32