PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G32490.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 490aa    MW: 50905.9 Da    PI: 9.6787
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G32490.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.8e-05250272223
                      EETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                      +C+ Cg+ Fs ++ L+ H  + H
  OPUNC01G32490.1 250 SCHRCGEQFSKWEALEAHHLSkH 272
                      7*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.704249277IPR007087Zinc finger, C2H2
PROSITE patternPS000280251272IPR007087Zinc finger, C2H2
SuperFamilySSF563991.25E-23274489No hitNo description
Gene3DG3DSA:3.90.228.104.1E-12298466IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MGERRRRAGA VAGGRAEDEK AASAPASAAP APAPAPTVWF ALKRSLHCRS EPSEVHVPRP  60
KAVAAAAAGG GGHLSAIVTK RAAPRSGCSR SIANLRDVIH GSKRHPERPP SCSPRSIGSS  120
EFLNPIAHEV VLSTNSRCEL KITGFGGCGG LAAAAGGGIL ASPHEADGDG AVVSSFVGTL  180
RPGTPGPGWS HGLQYSGSCR GSMRCTPPRS PNVLLDSRDA AAAGVTAHRA SCEDAVKSGG  240
KGGGGGGGLS CHRCGEQFSK WEALEAHHLS KHAVTELVEG DSSRKIVEII CRTSLLKSES  300
NCVRIERVFK VHNTQRTLAR FEEYREAVKL KASKLPKKHP RCLADGNELL RFHGATLSCA  360
LGGAAGSSSL CASDKCAVCR IIRHGFSAKK EGKAGVGVFT TSTSGRAYES IEVSGGAGGN  420
DDPAATRKAL LVCRVIAGRV HKPLENLKEF AGQTGFDSLA GKVGPYSNIE ELYLLNPRAL  480
LPCFVVICKA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1238246GGKGGGGGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0710140.0AK071014.1 Oryza sativa Japonica Group cDNA clone:J023079O17, full insert sequence.
GenBankAK1043110.0AK104311.1 Oryza sativa Japonica Group cDNA clone:001-017-D01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635096.10.0uncharacterized protein LOC4327046
TrEMBLA0A0E0JPN00.0A0A0E0JPN0_ORYPU; Uncharacterized protein
STRINGOPUNC01G32490.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32772841
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27240.11e-139C2H2 family protein