PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G33690.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 495aa    MW: 53361.4 Da    PI: 5.1656
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G33690.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.79.8e-174491148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT  Ed +lvd+vk++G g+W+++ +  g+ R++k+c++rw ++l
  OPUNC01G33690.1 44 KGPWTSAEDAILVDYVKKHGEGNWNAVQKNTGLFRCGKSCRLRWANHL 91
                     79******************************************9986 PP
2Myb_DNA-binding24.27.6e-0897130136
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS- CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRt 36 
                      +g++T+eE+ l+++++ ++G++ W++ a++ g   t
  OPUNC01G33690.1  97 KGAFTAEEERLIIQLHSKMGNK-WARMAAHNG-LAT 130
                      799*******************.******998.555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.7153995IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-224094IPR009057Homeodomain-like
SMARTSM007172.1E-144393IPR001005SANT/Myb domain
PfamPF002499.5E-154491IPR001005SANT/Myb domain
SuperFamilySSF466891.27E-2445121IPR009057Homeodomain-like
CDDcd001672.19E-114691No hitNo description
PROSITE profilePS500906.36592125IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.6E-1395127IPR009057Homeodomain-like
SMARTSM007172.296146IPR001005SANT/Myb domain
PfamPF002491.9E-697130IPR001005SANT/Myb domain
CDDcd001670.0026399125No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MYRVKSESDC EMIHQEQMDS PVADDGSSGG SPHRGGGGGP PLKKGPWTSA EDAILVDYVK  60
KHGEGNWNAV QKNTGLFRCG KSCRLRWANH LRPNLKKGAF TAEEERLIIQ LHSKMGNKWA  120
RMAAHNGLAT SQDFTCDNFI ANSEALPYAP HLSAVSISNL LGQSFASKSC SFMDQVNQTG  180
MLKQSDGVLP GLSDTINGVL SSVDQFSNDS EKLKQAVGFD YLHEANSSSK IIAPFGGALN  240
GSHAFLNGNF SASRPTSGPL KMELPSLQDT ESDPNSWLKY TVAPALQPTE LVDPYLQSPA  300
ATPSVKSECA SPRNSGLLEE LIHEAQTLRS GKNQQTSVRS SSSSVGTPCN TMVSPEFDMC  360
QEYWEEQHPG PFLNDCAPFS GNSFTESTPP VSAASPDIFQ LSKVSPAQST SMGSGEQVMG  420
PKYEPGDTSS HPENFRPDAL FSGNTADPSV FNNAIAMLLG NDLSIDCRPV LGDRIMFNSS  480
SWSNMPHACE MSEFK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-214012323105MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator of gibberellin-dependent alpha-amylase expression in aleurone cells. Involved in pollen and floral organs development. May bind to the 5'-TAACAAA-3' box of alpha-amylase promoter. {ECO:0000269|PubMed:9150608}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin in aleurone cells. {ECO:0000269|PubMed:9150608}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8308820.0CT830882.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA246D08, full insert sequence.
GenBankCT8308840.0CT830884.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA248K02, full insert sequence.
GenBankX983550.0X98355.1 O.sativa mRNA for transcription activator, GAMyb.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622335.10.0transcription factor GAMYB
RefseqXP_015622336.10.0transcription factor GAMYB
SwissprotA2WW870.0GAM1_ORYSI; Transcription factor GAMYB
TrEMBLA0A0E0JQ390.0A0A0E0JQ39_ORYPU; Uncharacterized protein
STRINGOPUNC01G33690.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39473664
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06100.33e-61myb domain protein 33