PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G34260.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 306aa    MW: 34700.5 Da    PI: 8.8922
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G34260.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY78.47.8e-25101161258
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnh 58 
                      +Dgy+WrKYGqK+++g++fpr YYrCt++   gCp+ k+ve+  +edp ++ ++Y++eH++
  OPUNC01G34260.1 101 HDGYQWRKYGQKMIRGNTFPRCYYRCTYHqdnGCPASKHVEQHnSEDPPLFRVIYTNEHTC 161
                      7***************************99999*******9852689************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.1E-2591162IPR003657WRKY domain
SuperFamilySSF1182904.84E-2394163IPR003657WRKY domain
SMARTSM007747.5E-36100163IPR003657WRKY domain
PfamPF031065.4E-25102161IPR003657WRKY domain
PROSITE profilePS5081120.335102164IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MRITLHRPAR SSVLLLGIRL IDAQQPLRYL ASTNLHITST CFRRLQETTM VKRSDNMVIS  60
SGCSRGAHKR LLPDSRSYDQ ENAMKKVCIG TRTEYTYAPY HDGYQWRKYG QKMIRGNTFP  120
RCYYRCTYHQ DNGCPASKHV EQHNSEDPPL FRVIYTNEHT CGSSNSASDY MASSMQIQQI  180
ADASLRKVQV GRLRKAEMET PRLQMHSPPR CSGGYNMAMK EEKDVIVSSL LTVIRGCHVA  240
ESGNNSAAAL PANRPPPVAR SDYAILPELF PASDDLKLNF MLDSVLDPHW VEPLDLTWFK  300
ESTHTG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0033020.0AP003302.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0703B11.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642042.11e-170probable WRKY transcription factor 64
TrEMBLA0A0E0JQD10.0A0A0E0JQD1_ORYPU; Uncharacterized protein
STRINGOPUNC01G34260.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118143139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.12e-19WRKY DNA-binding protein 55