PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G34280.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 362aa    MW: 39396.1 Da    PI: 6.509
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G34280.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY63.82.9e-20122184259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSST..TEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedp..kvveitYegeHnhe 59 
                      +Dgy+WrKYGqK++++ ++ r YY+Ct++   +C +kk+v++++  +   +  +tY +eH+++
  OPUNC01G34280.1 122 KDGYQWRKYGQKNIQDRNYLRLYYKCTFSrerRCAAKKQVQQQDGGEpvPMYLVTYLNEHTCQ 184
                      7**************************998899*********99544125899********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.3E-23108184IPR003657WRKY domain
SuperFamilySSF1182907.59E-21116185IPR003657WRKY domain
SMARTSM007743.2E-27121185IPR003657WRKY domain
PfamPF031061.8E-21122184IPR003657WRKY domain
PROSITE profilePS5081114.263123186IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MAFGQDTIEQ LYRELAGGRH LSAKLQALLE GPLDSRGQEE AADVSRELGR VFMVSLYMLK  60
PCSSSGRTEE VMTRTAPETR TDDSICLHTS KKVKRIRSEL VPLRNGREEM VTRTEITPSP  120
YKDGYQWRKY GQKNIQDRNY LRLYYKCTFS RERRCAAKKQ VQQQDGGEPV PMYLVTYLNE  180
HTCQLQPQQA VPGTPATAAS SPTTTTSRRQ SSSPPAEGLD STRNGAGGLF GRHLLLPHAV  240
GGGGGGGIDE EEAAIVMCLA TVISGGGAAA AAPPPLSWPS RVVPAFVASA GHSPSADESV  300
ADEAAAKMAD MDYCFQYDPS TFEAAADHHH RVLIGDDGDV PRVARITDTA DRWDVNQLCS  360
NH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0033021e-111AP003302.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0703B11.
GenBankAP0033481e-111AP003348.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0485B12.
GenBankAP0149571e-111AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006646438.11e-103PREDICTED: probable WRKY transcription factor 62
TrEMBLA0A0E0JQD30.0A0A0E0JQD3_ORYPU; Uncharacterized protein
STRINGOPUNC01G34280.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132432632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01900.13e-18WRKY DNA-binding protein 62