PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC01G35060.2

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NF-YB

Protein Properties

Length: 203aa MW: 22029 Da PI: 6.1191

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC01G35060.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	175.7	4.7e-55	31	124	1	94
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 vreqdrflPian+srimkk++Pan+ki+kdaket+qecvsefisfvtseasdkcq+ekrkting+dll+a++tlGfe+yv+plk+yl+kyre + OPUNC01G35060.2 31 VREQDRFLPIANISRIMKKAVPANGKIAKDAKETLQECVSEFISFVTSEASDKCQKEKRKTINGEDLLFAMGTLGFEEYVDPLKIYLHKYREGD 124 69*****************************************************************************************965 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.9E-52	29	133	IPR009072	Histone-fold
SuperFamily	SSF47113	5.43E-39	34	128	IPR009072	Histone-fold
Pfam	PF00808	4.9E-28	37	101	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	3.5E-22	65	83	No hit	No description
PROSITE pattern	PS00685	0	68	84	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	3.5E-22	84	102	No hit	No description
PRINTS	PR00615	3.5E-22	103	121	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 203 aa Download sequence Send to blast
MVDLGFLEGG EGAMADAGHD ESGSPPRSGG VREQDRFLPI ANISRIMKKA VPANGKIAKD 60 AKETLQECVS EFISFVTSEA SDKCQKEKRK TINGEDLLFA MGTLGFEEYV DPLKIYLHKY 120 REGDSKLSSK AGDGSVKKDT LGPHSGASSS SAQGMVGAYT QGMGYMQPQS NFHILVVLQS 180 FAFPYMYQVT QIYCMYLALN NAG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	5e-48	31	122	1	92	Transcription factor HapC (Eurofung)
4g92_B	5e-48	31	122	1	92	Transcription factor HapC (Eurofung)
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. May regulate the expression of photosynthetic genes, and may be involved in chloroplast and amyloplast development. {ECO:0000269\|PubMed:14617083}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY332466	0.0	AY332466.1 Oryza sativa (japonica cultivar-group) CCAAT-binding protein (CCB1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015611518.2	1e-107	nuclear transcription factor Y subunit B-2 isoform X1
Swissprot	Q5QMG3	1e-108	NFYB2_ORYSJ; Nuclear transcription factor Y subunit B-2
TrEMBL	A0A0E0JQN8	1e-149	A0A0E0JQN8_ORYPU; Uncharacterized protein
STRING	OPUNC01G35060.2	1e-150	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP201	38	331

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53340.1	6e-65	nuclear factor Y, subunit B10