PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G35370.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 222aa    MW: 23024.1 Da    PI: 8.5929
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G35370.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2110.00135880123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C+ C++ F++   L  H  +H
  OPUNC01G35370.1 58 FECKTCNRQFPTFQALGGHRASH 80
                     89**********99999998887 PP
2zf-C2H210.60.0018133155123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++Cp Cg  F+    L  H+r+H
  OPUNC01G35370.1 133 HECPVCGLEFPIGQALGGHMRRH 155
                      79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.25E-85680No hitNo description
PfamPF139121.2E-125782IPR007087Zinc finger, C2H2
SMARTSM003550.185880IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.1185885IPR007087Zinc finger, C2H2
PROSITE patternPS0002806080IPR007087Zinc finger, C2H2
SuperFamilySSF576673.25E-8128155No hitNo description
PfamPF139124.3E-11132157IPR007087Zinc finger, C2H2
PROSITE profilePS501579.806133160IPR007087Zinc finger, C2H2
SMARTSM003550.14133155IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280135155IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MSKRSRSTWD MQEIIGSVDT ARVLMLLAQQ SQHGVLGGGF AAGAQPVVVR GGAHDRVFEC  60
KTCNRQFPTF QALGGHRASH KRPRQQQHAL GGGGGGDDQQ HALGGGGGGD DVGLCLGRQP  120
TPPRPQPAKP RVHECPVCGL EFPIGQALGG HMRRHRAEAE AAATTTNDVA KAAAVKACDG  180
GGVCLDLNLT PSENCAKCRN VVGLGAAGQG VHKALAMLDC FL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2662891e-150AY266289.1 Oryza sativa (japonica cultivar-group) zinc finger transcription factor ZFP19 (ZFP19) mRNA, complete cds.
GenBankCP0126091e-150CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633806.12e-98zinc finger protein ZAT12
TrEMBLA0A0E0JQS51e-158A0A0E0JQS5_ORYPU; Uncharacterized protein
STRINGOPUNC01G35370.11e-159(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62822138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59820.14e-23C2H2 family protein