PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G35440.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 178aa    MW: 18407.3 Da    PI: 5.8575
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G35440.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.000674365123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C+ C+k+F++   L  H  +H
  OPUNC01G35440.1 43 FECKTCNKRFPSFQALGGHRTSH 65
                     89**********99998888777 PP
2zf-C2H211.40.0009892114123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C  Cg  Fs    L  H+r+H
  OPUNC01G35440.1  92 HECAVCGVEFSMGQALGGHMRRH 114
                      78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.46E-64067No hitNo description
PfamPF139122.4E-124265IPR007087Zinc finger, C2H2
SMARTSM003550.0874365IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.4924370IPR007087Zinc finger, C2H2
PROSITE patternPS0002804565IPR007087Zinc finger, C2H2
SuperFamilySSF576672.51E-690118No hitNo description
PfamPF139127.8E-1291116IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.5E-491118IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.9992119IPR007087Zinc finger, C2H2
SMARTSM003550.8992114IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028094114IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MESLRVHASA LLSLSSPASA SASQPTSSST PAGRRALAAE GVFECKTCNK RFPSFQALGG  60
HRTSHTRLQA KLLSDPAAAA SAAAERDRAR VHECAVCGVE FSMGQALGGH MRRHRGETGT  120
TTVVLADADA DDSGGATVPQ QPEAMPDLNY PPLEDAGDGQ ESSTSGHGSE PELLNLLV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:16244149}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
GenBankCT8313980.0CT831398.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN012H15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634661.15e-78zinc finger protein ZAT8
SwissprotQ681X45e-24ZAT5_ARATH; Zinc finger protein ZAT5
TrEMBLA0A0E0JQT21e-125A0A0E0JQT2_ORYPU; Uncharacterized protein
STRINGOPUNC01G35440.11e-125(Oryza punctata)
STRINGOPUNC01G35470.11e-125(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50137157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46090.12e-22C2H2 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]