PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G35740.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 804aa    MW: 89182.5 Da    PI: 6.1417
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G35740.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS385.27.8e-1184287972374
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                      ++lL++cA+ v+++d + a++lL++++++a  +gd  qRla++f+++L+arla+++s++yk+ + ++ +    +++l+a++l+  ++P+ k+sh
  OPUNC01G35740.1 428 ETLLIHCAQSVATDDRRSATELLKQIRQHAHANGDGDQRLAHCFANGLEARLAGTGSQIYKTYTITRLP---CTDVLKAYQLYLAACPFKKISH 518
                      789**************************************************************9999...9********************* PP

             GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrle 187
                        aNq+I++ave++++vHi+D++i +G+QWp+L+q L++Rp+gpp+lRiTg++ p++g   +e++eetg+ L+++A++++vpfef++ +a+r+e
  OPUNC01G35740.1 519 YFANQTIMNAVEKAKKVHIVDYGIYYGFQWPCLIQRLSNRPGGPPKLRITGIDTPQPGfrPAERTEETGRYLSDYAQTFNVPFEFQA-IASRFE 611
                      ***************************************************************************************.7***** PP

             GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281
                      +++ e+L+++++E+l+Vn++++ ++l+desv  es+r+  Lk++++++P+++++   + ++n++ F++rf eal +ysa+fd+le+++pr++e+
  OPUNC01G35740.1 612 AVRKEDLHIEEDEVLIVNCMFKFKNLMDESVVAESPRNMALKTIRNMNPHLFIHGVVNGSYNAPFFVTRFREALFHYSAIFDMLETNIPRDNEQ 705
                      ********************************************************************************************** PP

             GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      r  +E +l++re+ nv++ceg er er et+++W+ r ++aGFk++pl+++++k a+  +r +++d + ++e++ +l++gWk+r L+++S W+
  OPUNC01G35740.1 706 RLLIESALFSREAINVISCEGLERMERPETYKQWQVRNQRAGFKQLPLNQDMMKRAREKVRCYHKD-FIIDEDNRWLLQGWKGRILFALSTWK 797
                      ****************************************************************77.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098568.126401778IPR005202Transcription factor GRAS
PfamPF035142.7E-115428797IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 804 aa     Download sequence    Send to blast
MLPGSKRDAH LPLPIYPQIA AANGFAAEEL DPLLFLSPDA VCGGGDYLNI VSAPPISAAS  60
TNGASPPRDV SVSSAASTAA AQHDDSEAFS DIVLGYINRM LMAEDIDEKF EHYPVNADDL  120
LAAEKPFLEI LADQSPYSGG SSVESPDGSS VANSCNSLSP CNCSSSSDGL GAVPQTPVLE  180
FPTAAFLQTP QLYGDLIPKG GMVESGGAWP YDPTEFYQLQ TKPVRENLLS QSSSFASSNG  240
SSVTFSEGFE SLLSPAGVLP DVSLNDFVVQ SQQALQFRRG FQEASRFLPD ESKLVIDVDK  300
LYSGDEGSRF LGDVRQEKKL VKVKTETSDV EAAVHRGKKH FYGDDLDAEE GRCNKHSAPG  360
IDTDHLVRDL MDKVLLCNGE TCSKGVKELR EALQHDVAKH SGGGHGKGSS HGKGRGKKQP  420
KKEVVDLETL LIHCAQSVAT DDRRSATELL KQIRQHAHAN GDGDQRLAHC FANGLEARLA  480
GTGSQIYKTY TITRLPCTDV LKAYQLYLAA CPFKKISHYF ANQTIMNAVE KAKKVHIVDY  540
GIYYGFQWPC LIQRLSNRPG GPPKLRITGI DTPQPGFRPA ERTEETGRYL SDYAQTFNVP  600
FEFQAIASRF EAVRKEDLHI EEDEVLIVNC MFKFKNLMDE SVVAESPRNM ALKTIRNMNP  660
HLFIHGVVNG SYNAPFFVTR FREALFHYSA IFDMLETNIP RDNEQRLLIE SALFSREAIN  720
VISCEGLERM ERPETYKQWQ VRNQRAGFKQ LPLNQDMMKR AREKVRCYHK DFIIDEDNRW  780
LLQGWKGRIL FALSTWKPDN RSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-524317978375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0032400.0AP003240.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0406G08.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619294.10.0scarecrow-like protein 9 isoform X1
TrEMBLA0A0E0JQW50.0A0A0E0JQW5_ORYPU; Uncharacterized protein
STRINGOPUNC01G35740.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125183137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-176GRAS family protein