PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G35780.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 324aa    MW: 34163.5 Da    PI: 6.5804
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G35780.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.74.2e-32143199258
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                       Dgy+WrKYGqK++k++++prsYY+Cts++C++kk+ve+s++dp+++++tYeg+H+h
  OPUNC01G35780.1 143 ADGYKWRKYGQKSIKNNPHPRSYYKCTSSRCSAKKHVEKSTDDPEMLIVTYEGSHHH 199
                      6*******************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.1E-31139200IPR003657WRKY domain
SuperFamilySSF1182901.31E-26140201IPR003657WRKY domain
SMARTSM007741.1E-35142201IPR003657WRKY domain
PfamPF031062.9E-26144199IPR003657WRKY domain
PROSITE profilePS5081128.174144202IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MGDVLRAQAT AAADEVGGAW PGELDEHLIG ELLGDDGQFV PAAEHRDLYY SFDAGTSAAA  60
ATAACNGGGS AEHERPRPAP AVSRALCSVY SGPTIRDIEK ALSSSSAASS RPPYPSGRRY  120
SSLVEAESKY TSKVRSCGGK MPADGYKWRK YGQKSIKNNP HPRSYYKCTS SRCSAKKHVE  180
KSTDDPEMLI VTYEGSHHHG PQPLFPPHIA QPPPPTSVVD FSAAAGAEPS SSSAAARKRK  240
NDARAAFSPT TSEDDVDGAG LRRGDAEHAA PRRVATDHSC DDGGGSTSAS SAARADAATA  300
LSSDSPPTIW SCLDWPWSQE TLFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-211441991974Probable WRKY transcription factor 4
2lex_A6e-211441991974Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8355091e-156CT835509.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA014N20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635485.11e-159WRKY transcription factor WRKY28
TrEMBLA0A0E0JQW90.0A0A0E0JQW9_ORYPU; Uncharacterized protein
STRINGOPUNC01G35780.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP131442633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.14e-29WRKY DNA-binding protein 49