PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G36100.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 604aa    MW: 64230.6 Da    PI: 7.9586
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G36100.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.75.5e-103824191954
                      HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      Fe   ++yp+  +++ LAk++gLt +qV++WF N R +
  OPUNC01G36100.1 382 FEHflHPYPTDGDKQMLAKQTGLTRNQVSNWFINARVR 419
                      554459******************************88 PP
2BELL97.31.3e-31246315372
             BELL   3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                      +e q kk+kL+s++eeV+krY+qy++q+q+v++sFe+vag  +a+p+++lAl+a+++hF+cLk +i +q+
  OPUNC01G36100.1 246 AEQQWKKTKLISMMEEVCKRYRQYYQQVQAVMASFETVAGFSNAAPFAALALRAMAKHFKCLKSMILNQL 315
                      5899***************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.1E-34171313IPR006563POX domain
PfamPF075261.1E-36176311IPR006563POX domain
PROSITE profilePS5007112.228360423IPR001356Homeobox domain
CDDcd000862.11E-13363424No hitNo description
SMARTSM003897.4E-11363427IPR001356Homeobox domain
SuperFamilySSF466893.98E-17365432IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-28366427IPR009057Homeodomain-like
PfamPF059206.4E-19380419IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 604 aa     Download sequence    Send to blast
MSSAAGGGGY GGGQGGGADH HHHGHAGHLL LHHHPQHVAG ASVAAAAAAA GGQMYHVPQH  60
SRREKLRFPP DAGDSPPPHG HAPPQQHGSW PPPPAFYSYA SSSSSYSPHS PTLAQAQLVA  120
HGLAPPLPQI PTQNFSLSLS SASSNPPPPQ AQPRRQLGGL APATGPFGPF TGYAAVLGRS  180
RFLGPAEKLF EEICDVGGAA SHVDRSISDE GLLDVDPMDG VDHDTVDHDL GGADRAAADA  240
GPISGAEQQW KKTKLISMME EVCKRYRQYY QQVQAVMASF ETVAGFSNAA PFAALALRAM  300
AKHFKCLKSM ILNQLRNTSN KVAVKDGLNK DIAVFGLAGG SSGGAGLQRG NSASAFGQPH  360
NIWRPQRGLP ERAVSVLRAW LFEHFLHPYP TDGDKQMLAK QTGLTRNQVS NWFINARVRL  420
WKPMVEEIHN LEMRQMHKHS VVDKGQHSVH HQAQHSSQCS GKPSDPSDSH PGQSSSITRN  480
HNTAASQGFP DELSQMSQSI QGQVSFAYNG LTSQHNIASP HHQHQQVGGV GIGGGNGGVS  540
LTLGLHQNNR VCIAEPLPAA LPSNLAHRFG LEEVSDAYVM SSFGGQDRHF GKEIGGHLLH  600
DFVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A5e-17369426158Homeobox protein Meis1
4xrs_B5e-17369426158Homeobox protein Meis1
5bng_A6e-17369427159Homeobox protein Meis2
5bng_B6e-17369427159Homeobox protein Meis2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0713300.0AB071330.1 Oryza sativa Indica Group qSH-1 mRNA for qSH-1, complete cds.
GenBankAB0713310.0AB071331.1 Oryza sativa Japonica Group qSH-1 mRNA for qSH-1, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015688150.10.0PREDICTED: BEL1-like homeodomain protein 9, partial
TrEMBLA0A0E0JR120.0A0A0E0JR12_ORYPU; Uncharacterized protein
STRINGOPUNC01G36100.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25283881
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27990.11e-59BEL1-like homeodomain 8