PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G36560.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 446aa    MW: 48292.8 Da    PI: 7.7489
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G36560.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.33.1e-17116162148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT +Ede l++ v ++G + W+tIa+ ++ gR +kqc++rw ++l
  OPUNC01G36560.1 116 KGAWTRQEDEVLKQMVILHGDRKWATIAKSLP-GRIGKQCRERWTNHL 162
                      79******************************.************996 PP
2Myb_DNA-binding55.41.4e-17170210345
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                       WT+e+d+ l++a+k +G++ W+ Iar+++ gR+++ +k++w+
  OPUNC01G36560.1 170 IWTEEDDKMLIEAHKIYGNR-WSVIARCLP-GRSENAVKNHWN 210
                      6*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.482111166IPR017930Myb domain
SuperFamilySSF466891.27E-29113209IPR009057Homeodomain-like
SMARTSM007177.8E-16115164IPR001005SANT/Myb domain
PfamPF002492.4E-15116162IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-25117169IPR009057Homeodomain-like
CDDcd001671.50E-14118162No hitNo description
SMARTSM007171.9E-17167215IPR001005SANT/Myb domain
PROSITE profilePS5129417.512167217IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-20170214IPR009057Homeodomain-like
CDDcd001676.91E-15171213No hitNo description
PfamPF002496.0E-15171210IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MLPTSKNKLM TATSNSFLNQ DPAMTGSGIP HMYFASSSHG TSGHYQSPGG APITMAVPDM  60
GFLVAGIGMA PSSFVMPEGA LAASYSAMAT VPVGVVVPQQ QQSRFGGNNG NPGSFKGAWT  120
RQEDEVLKQM VILHGDRKWA TIAKSLPGRI GKQCRERWTN HLRPDIKKDI WTEEDDKMLI  180
EAHKIYGNRW SVIARCLPGR SENAVKNHWN ATKRSLKSKR RMKKKSVQVV TLPPGQLSPL  240
EEYIRSQYPS AVETTPTQPA VPALSSDVIV HDAEPVSTGP TITTQELTGT DPPEIGMYLG  300
LGNPAGPTQQ LGVMNLNMPL APDLNAYNDQ REGYYLPFIP KGNLHYGMMH VPAPSVQQHK  360
GISVDQGMHS SCLSLYHPFP GIHPVSVDFG CQPSNHANAG GYYSEAGPSS GSGSGDPDDV  420
DVIQMASRQF LMPSEAEVTL DLTRFK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-421102181110B-MYB
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2879950.0AK287995.1 Oryza sativa Japonica Group cDNA, clone: J075101C16, full insert sequence.
GenBankFJ9402150.0FJ940215.1 Oryza sativa Japonica Group clone KCS005D12 Myb protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645142.10.0transcription factor MYB73
TrEMBLA0A0E0JR700.0A0A0E0JR70_ORYPU; Uncharacterized protein
STRINGOPUNC01G36560.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP188233101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27785.17e-44myb domain protein 118