PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC01G36780.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 371aa MW: 40771.8 Da PI: 6.5019

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC01G36780.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.7	9.6e-06	213	232	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 + C+ C+k+F+r n++ H+ OPUNC01G36780.1 213 FICHVCNKTFNRYNNMQMHM 232 89*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.51E-5	209	236	No hit	No description
PROSITE profile	PS50157	10.201	213	240	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	2.9E-5	213	232	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	215	235	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	4.57E-5	281	317	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence Send to blast
MRVGLRTCSA MEGEVVAASP FFEWLKPPPR PASSSSWSSS FSSSSSMASR DQETVPGEDG 60 GGEIQEDHSG MTCLPLLSML EEGKRHEHPV KKEGIVSSAC ASGVLEPAVE LNIGLPFTGS 120 SAQEVTMEED DEEEDDDDVG EEDMDEWKPM HGGCTKVEGE EEQYGEAVAS VEGSSSITAV 180 GEFGGVGAES GVAMSSRYWI PTPAQILVGP VQFICHVCNK TFNRYNNMQM HMWGHGREYR 240 KGPESLKGTQ TLAMLKLPCY CCAAGCKNNV AHPRARPLKD FRTLQTHYKR KHGAKPFRCR 300 RCAKPFAVKG DWRTHEKNCG KRWFCACGSD FKHKRSLNDH VRSFGAHHLP VAESAAATTP 360 ADKDHIISFQ R

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence Send to blast

MRVGLRTCSA MEGEVVAASP FFEWLKPPPR PASSSSWSSS FSSSSSMASR DQETVPGEDG  60
GGEIQEDHSG MTCLPLLSML EEGKRHEHPV KKEGIVSSAC ASGVLEPAVE LNIGLPFTGS  120
SAQEVTMEED DEEEDDDDVG EEDMDEWKPM HGGCTKVEGE EEQYGEAVAS VEGSSSITAV  180
GEFGGVGAES GVAMSSRYWI PTPAQILVGP VQFICHVCNK TFNRYNNMQM HMWGHGREYR  240
KGPESLKGTQ TLAMLKLPCY CCAAGCKNNV AHPRARPLKD FRTLQTHYKR KHGAKPFRCR  300
RCAKPFAVKG DWRTHEKNCG KRWFCACGSD FKHKRSLNDH VRSFGAHHLP VAESAAATTP  360
ADKDHIISFQ R

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK064334	0.0	AK064334.1 Oryza sativa Japonica Group cDNA clone:002-107-G07, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015625834.1	0.0	protein TRANSPARENT TESTA 1
TrEMBL	A0A0E0JRA7	0.0	A0A0E0JRA7_ORYPU; Uncharacterized protein
STRING	OPUNC01G36780.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4472	36	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51220.1	3e-94	WIP domain protein 5