PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC01G36980.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 255aa MW: 28234.4 Da PI: 5.4093

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC01G36980.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	136.6	1.6e-42	8	140	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 +pGfrF Pt+eel+++yL++k++g + ++e+vi+ +d+y+v+P +L + + +e + w++F++r++++a+g r++r+t sgyWka g+ OPUNC01G36980.1 8 APGFRFYPTEEELICFYLRNKLDGLRDDIERVIPVFDVYSVDPLQLSEihhemlGAGGEGEPWFYFCPRQEREARGGRPSRTTPSGYWKAAGTP 101 59*************************99***********8545654433347779**************************** PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 v+s++++ +g+kkt+vfy+grap+g+kt+W m+eyr+ OPUNC01G36980.1 102 GVVYSADRRPIGMKKTMVFYRGRAPSGTKTTWKMNEYRA 140 ***********************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	44.695	7	178	IPR003441	NAC domain
SuperFamily	SSF101941	1.57E-46	8	177	IPR003441	NAC domain
Pfam	PF02365	8.3E-24	9	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MADGGRRAPG FRFYPTEEEL ICFYLRNKLD GLRDDIERVI PVFDVYSVDP LQLSEIHHEM 60 LGAGGEGEPW FYFCPRQERE ARGGRPSRTT PSGYWKAAGT PGVVYSADRR PIGMKKTMVF 120 YRGRAPSGTK TTWKMNEYRA FHYPDASSAA ASSASAAAPP SLPPQLRSEF SLCRLYTRSG 180 GIRQFDRRPL AGGGDENPGP SMAAAAASPE ENDGSGSSMQ QQQLELMDHG GAVDPDWDQW 240 DDVATLTALL YWPRD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	7e-28	9	139	19	141	NO APICAL MERISTEM PROTEIN
1ut4_B	7e-28	9	139	19	141	NO APICAL MERISTEM PROTEIN
1ut7_A	7e-28	9	139	19	141	NO APICAL MERISTEM PROTEIN
1ut7_B	7e-28	9	139	19	141	NO APICAL MERISTEM PROTEIN
3swm_A	8e-28	9	142	22	147	NAC domain-containing protein 19
3swm_B	8e-28	9	142	22	147	NAC domain-containing protein 19
3swm_C	8e-28	9	142	22	147	NAC domain-containing protein 19
3swm_D	8e-28	9	142	22	147	NAC domain-containing protein 19
3swp_A	8e-28	9	142	22	147	NAC domain-containing protein 19
3swp_B	8e-28	9	142	22	147	NAC domain-containing protein 19
3swp_C	8e-28	9	142	22	147	NAC domain-containing protein 19
3swp_D	8e-28	9	142	22	147	NAC domain-containing protein 19
4dul_A	7e-28	9	139	19	141	NAC domain-containing protein 19
4dul_B	7e-28	9	139	19	141	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK071274	0.0	AK071274.1 Oryza sativa Japonica Group cDNA clone:J023087C18, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015632691.1	1e-158	NAC domain-containing protein 90 isoform X2
Swissprot	Q9FMR3	1e-64	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A0E0JRD8	0.0	A0A0E0JRD8_ORYPU; Uncharacterized protein
STRING	OPUNC01G36980.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1005	38	140

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	6e-65	NAC domain containing protein 90

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]