PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G38660.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 444aa    MW: 46729.5 Da    PI: 4.91
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G38660.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.23e-05135157123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++C+k F ++   + H+r+H
  OPUNC01G38660.1 135 FPCHICNKEFGSRKAVHGHMRVH 157
                      89*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139125.0E-4134159IPR007087Zinc finger, C2H2
SuperFamilySSF576675.59E-7134157No hitNo description
Gene3DG3DSA:3.30.160.604.2E-4135161IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0032135157IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.154135162IPR007087Zinc finger, C2H2
PROSITE patternPS000280137157IPR007087Zinc finger, C2H2
SMARTSM003550.39278302IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280280302IPR007087Zinc finger, C2H2
SuperFamilySSF576675.59E-7328355No hitNo description
PfamPF139124.0E-7332357IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.242333360IPR007087Zinc finger, C2H2
SMARTSM003550.14333355IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280335355IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MGEEKSSSSG SDLRRRPDPP PQEEEEEEIE EGEIHRGGGG GGYYDSGSET EDDDDRYVFQ  60
SRRDDDDDDD DEEGMHPTSK RRRLEDIIAE TRGALPLPSP TPSSGSEGTI SDHGDGIVAG  120
ASAAADAAPV AREAFPCHIC NKEFGSRKAV HGHMRVHQAE KDKEPSLHLA LGWASTGKRG  180
ANGNARAVTV AFAPMEQVVD DDDTRAIVLA PAQPPPPMLA TAVARTNLDE PSAVMVAAEA  240
NHPNQVVEDN HHLPAAAPYV SAAHHRAPVP EAGQGGPYRC KVPGCNMEYR THQGLGGHVA  300
GHINREKQAV AAAAAAQGGS GGGLGGGRPE GRHPCKKCGQ EFLTGVALGG HMRKHYEPKK  360
KHDDLVLTLS VALPPTPAPA PAIAGAALPP VEIKVEVAEH EAEPVPAPAP APPPAEVRRN  420
IVRIFGVDIE KPADEEEQDG GSDV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17983KRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0034311e-174AP003431.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1099D03.
GenBankAP0149571e-174AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881238.11e-143zinc finger protein ZAT1-like
TrEMBLA0A0E0JS050.0A0A0E0JS05_ORYPU; Uncharacterized protein
STRINGOPUNC01G38660.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139281224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46080.14e-09C2H2 family protein