PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G39450.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 231aa    MW: 24740.6 Da    PI: 8.1358
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G39450.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.44.6e-12165210655
                      HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +++Er RR ri +++ +L++l+P+     +k  + +++L  Av YIk+Lq
  OPUNC01G39450.1 165 SIAERERRTRISKRLKKLQDLVPNM----DKQTNTSDMLDIAVTYIKELQ 210
                      689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.941159209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.06E-15162219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.80E-12163214No hitNo description
Gene3DG3DSA:4.10.280.103.5E-15164220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-9165210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-12165215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MAATRGMGGY SGGGGDAGAM AHRRLSSQWS FSRQDLPQIS EMGGLIPDIG ESIVTGGGGG  60
CNSSSDAGAQ SSSFLSSRNF SMSSWDDTNS IMFSPPSSSK KARVAVSGDH GDDMVSSFSN  120
IDSQFGLSKQ SSLEMAGMDD FLQLQPDSVA CRARAKRGCA THPRSIAERE RRTRISKRLK  180
KLQDLVPNMD KQTNTSDMLD IAVTYIKELQ GQVEKLKHDQ ANCTCSGKHN C
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0682540.0AK068254.1 Oryza sativa Japonica Group cDNA clone:J013149F02, full insert sequence.
GenBankAK1057130.0AK105713.1 Oryza sativa Japonica Group cDNA clone:001-201-E12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015690675.11e-141PREDICTED: transcription factor bHLH128-like, partial
TrEMBLA0A0E0JSA81e-169A0A0E0JSA8_ORYPU; Uncharacterized protein
TrEMBLA0A0E0JSA91e-169A0A0E0JSA9_ORYPU; Uncharacterized protein
STRINGOMERI01G37120.11e-139(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.13e-45bHLH family protein