PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G39450.2
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 234aa    MW: 24999.9 Da    PI: 8.1358
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G39450.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.44.7e-12168213655
                      HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +++Er RR ri +++ +L++l+P+     +k  + +++L  Av YIk+Lq
  OPUNC01G39450.2 168 SIAERERRTRISKRLKKLQDLVPNM----DKQTNTSDMLDIAVTYIKELQ 213
                      689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.941162212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.19E-15165222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.65E-12166217No hitNo description
Gene3DG3DSA:4.10.280.103.6E-15167223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-9168213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-12168218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MAGMAATRGM GGYSGGGGDA GAMAHRRLSS QWSFSRQDLP QISEMGGLIP DIGESIVTGG  60
GGGCNSSSDA GAQSSSFLSS RNFSMSSWDD TNSIMFSPPS SSKKARVAVS GDHGDDMVSS  120
FSNIDSQFGL SKQSSLEMAG MDDFLQLQPD SVACRARAKR GCATHPRSIA ERERRTRISK  180
RLKKLQDLVP NMDKQTNTSD MLDIAVTYIK ELQGQVEKLK HDQANCTCSG KHNC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0682540.0AK068254.1 Oryza sativa Japonica Group cDNA clone:J013149F02, full insert sequence.
GenBankAK1057130.0AK105713.1 Oryza sativa Japonica Group cDNA clone:001-201-E12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015690675.11e-142PREDICTED: transcription factor bHLH128-like, partial
TrEMBLA0A0E0JSA91e-171A0A0E0JSA9_ORYPU; Uncharacterized protein
STRINGOMERI01G37120.11e-140(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.14e-45bHLH family protein