PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC01G39670.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

GRAS

Protein Properties

Length: 82aa MW: 8955.39 Da PI: 7.9187

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC01G39670.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	24.6	2.9e-08	42	81	337	374
GRAS 337 aklllrkvk..sdgyrveeesgslvlgWkdrpLvsvSaWr 374 a+ l +++ gy+v ee+g+lvlgWk++p++++ +W+ OPUNC01G39670.1 42 AREWLDEYGgsAGGYTVSEEKGCLVLGWKGKPIIATLCWK 81 56667777763456*************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03514	1.0E-5	42	81	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 82 aa Download sequence Send to blast
MYSIYLQSEV GSSIKSALKN ALHTPQASLL IFCSFSSTFL LAREWLDEYG GSAGGYTVSE 60 EKGCLVLGWK GKPIIATLCW KC

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015646199.1	2e-16	DELLA protein RGL1
TrEMBL	A0A0E0JSE1	2e-52	A0A0E0JSE1_ORYPU; Uncharacterized protein
STRING	OPUNC01G39670.1	3e-53	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5640	33	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66350.1	2e-08	RGA-like 1