PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G39690.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 116aa    MW: 13158.1 Da    PI: 10.8139
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G39690.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS582.1e-1843112264336
             GRAS 264 ysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakq 336
                      y+alfd     lpr +  ++ +E++ +g ei nvv ce a+r+erhe++ +Wr+r+++aGF++vp++  a  q
  OPUNC01G39690.1  43 YAALFD---PALPRYDARQARIEQFHFGAEIHNVVGCERAARVERHERADQWRRRMSRAGFQSVPIKMAAKVQ 112
                      566665...67899999*************************************************9888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098513.3941116IPR005202Transcription factor GRAS
PfamPF035147.1E-1643112IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 116 aa     Download sequence    Send to blast
MVKESREALI KLGVPDHPQP VAQGVHAGGV GRRAQQALLP RPYAALFDPA LPRYDARQAR  60
IEQFHFGAEI HNVVGCERAA RVERHERADQ WRRRMSRAGF QSVPIKMAAK VQEWLD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0037912e-91AP003791.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1065G12.
GenBankAP0067572e-91AP006757.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0551C06.
GenBankAP0149572e-91AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126092e-91CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002456800.11e-34DELLA protein RGL1
RefseqXP_025878199.13e-35DELLA protein GAI-like
TrEMBLA0A0E0JSE32e-78A0A0E0JSE3_ORYPU; Uncharacterized protein
STRINGOPUNC01G39690.14e-79(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56403354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.13e-09scarecrow-like 3