PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G39760.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 307aa    MW: 32843.6 Da    PI: 8.6455
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G39760.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS24.14e-08158203146
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayft 46 
                      lv+lL++cAeav+ +d ++a alL +l+  a  +g+++qR+a++f 
  OPUNC01G39760.1 158 LVQLLVACAEAVACRDRAQAAALLRELQAGAPVHGTAFQRVASCFC 203
                      689****************************************995 PP
2GRAS437.4e-14205249290334
             GRAS 290 lgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaa 334
                      +g ei+nvv cega+r+erhe++ +W +r+++aGF++vp++  a 
  OPUNC01G39760.1 205 FGAEIRNVVGCEGAARVERHERADQWPRRMSRAGFQSVPIKMAAK 249
                      899************************************987654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035141.4E-5158203IPR005202Transcription factor GRAS
PfamPF035142.6E-11205249IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MSTEPRNSIS YCSQQQSHHL TLTQQDSTII CANQELDYYR FYDVDEAAFD GKEVELVSRF  60
SKASRMDNLS SPYQPSWPPA QASVDVVRSS ELLRVRKKRF WDVLESCKQK VEAMEAMDTP  120
APPAFRDGEG QGVGGDSDGG GGGGGGGGGG GGADGMRLVQ LLVACAEAVA CRDRAQAAAL  180
LRELQAGAPV HGTAFQRVAS CFCHFGAEIR NVVGCEGAAR VERHERADQW PRRMSRAGFQ  240
SVPIKMAAKA REWLDENGGG GGGYTRRRRR KAASCSAGRG NRSSPPHAGN ARPLSSGRPA  300
AAPERGS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0037911e-179AP003791.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1065G12.
GenBankAP0067571e-179AP006757.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0551C06.
GenBankAP0149571e-179AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646199.14e-93DELLA protein RGL1
RefseqXP_015690691.13e-94PREDICTED: uncharacterized protein LOC107303918
TrEMBLA0A0E0JSF20.0A0A0E0JSF2_ORYPU; Uncharacterized protein
STRINGOPUNC01G39760.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56403354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.12e-09scarecrow-like 3