PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC01G40050.2

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 379aa MW: 41411.5 Da PI: 5.2621

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC01G40050.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.6	5e-06	352	375	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y C+ C+k+F++++ L+ H + H OPUNC01G40050.2 352 YACKSCNKTFNTSMGLEAHSKAkH 375 89*****************88766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	12.341	352	379	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	354	375	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence Send to blast
MISHPMPRPP RNEGKSEERS KSDASTPPPR RCSLPLSKTL AEEHGEERRG GGRRRGHGER 60 DRLRAAHGGD HGILGPGETM KCDPPGEFYY HISQIALEPG ELNENVQVLV EVDGKRILLG 120 TLSVELRPQL SIDLVFEKEF ELLHTSKIYS DESDEEVPLA IPLFPNSDDD KIKEAQNSPS 180 KFTTLKSAAA ASPIPEAIVE ERKKYGKSKA DDDDSDDESD ASGEDESDDD EDMIDKQDSS 240 DDDDGESSDE EETPSNNTKG TNRPVETPLN TPPQKKARLA TPIMDSKAGT GKRSGYVHVA 300 TPHPAKQAKK TPANNDMAKQ SSGYVHVATP YPAKQAKKRT ANNDMSEHSA GYACKSCNKT 360 FNTSMGLEAH SKAKHTATK

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence Send to blast

MISHPMPRPP RNEGKSEERS KSDASTPPPR RCSLPLSKTL AEEHGEERRG GGRRRGHGER  60
DRLRAAHGGD HGILGPGETM KCDPPGEFYY HISQIALEPG ELNENVQVLV EVDGKRILLG  120
TLSVELRPQL SIDLVFEKEF ELLHTSKIYS DESDEEVPLA IPLFPNSDDD KIKEAQNSPS  180
KFTTLKSAAA ASPIPEAIVE ERKKYGKSKA DDDDSDDESD ASGEDESDDD EDMIDKQDSS  240
DDDDGESSDE EETPSNNTKG TNRPVETPLN TPPQKKARLA TPIMDSKAGT GKRSGYVHVA  300
TPHPAKQAKK TPANNDMAKQ SSGYVHVATP YPAKQAKKRT ANNDMSEHSA GYACKSCNKT  360
FNTSMGLEAH SKAKHTATK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK241121	1e-155	AK241121.1 Oryza sativa Japonica Group cDNA, clone: J065094J12, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015694821.1	1e-141	PREDICTED: histone deacetylase HDT2-like
TrEMBL	A0A0E0JSJ2	0.0	A0A0E0JSJ2_ORYPU; Uncharacterized protein
STRING	OPUNC01G40050.3	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11173	20	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03740.1	2e-11	histone deacetylase 2C