PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G40380.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 468aa    MW: 50216.5 Da    PI: 4.6768
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G40380.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF53.72.6e-171152344
                     --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
           SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                     i n++ r +t+ kR++g++KKA EL +LCd+ vav+ ++++g
  OPUNC01G40380.1 11 IANQRTRATTYKKRKAGLIKKAGELATLCDIPVAVVCAGPDG 52
                     89**************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.6E-18160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.568152IPR002100Transcription factor, MADS-box
CDDcd002663.09E-25284No hitNo description
PRINTSPR004042.8E-7323IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.68E-20388IPR002100Transcription factor, MADS-box
PfamPF003198.4E-161152IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-72338IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-73859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MARRRTSLAL IANQRTRATT YKKRKAGLIK KAGELATLCD IPVAVVCAGP DGGAPTVWVS  60
PEGREDGDVI ARYRALPAEK RAKHTHVVYL QEELDKKKAK LAALQQKGPV ELAPPDAALN  120
GMSQDELQQL LASIDATLLA TAERREALGL LAGADDAAGG GGRRDADVPP ARHGVRCTGT  180
NSAGVHGFQH QAHHAPANAG RLGPATCYPF HPYNAGVTLM QPAYNNVQYM GGHGVDMNGY  240
QLQMQMPSNG RNNGQLAWGG FQPCDATVVQ PVYGHLQYWG NNVDGNQMQP APPANGGWHN  300
PVGTWGNDDG EPRNAIVPSA GDPYMDISSN QMQPAPAANG GWHNPGTWNN DGEPCNMPSA  360
GHPYIDIEGD IDGNYIDTTV FDYQTTSTSD NFMDAPVQFL TTGTDESIIT NVAGRNETEF  420
SIDDLLQCSD ASQHSSSLEQ LHYLSDLADG FDFGCSYDMS LDLCWDDD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RRRTSLALIANQRTRATTYKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1108281e-163AK110828.1 Oryza sativa Japonica Group cDNA clone:002-171-H11, full insert sequence.
GenBankAP0034331e-163AP003433.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0004D12.
GenBankAP0034361e-163AP003436.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0470A12.
GenBankAP0149571e-163AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126091e-163CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015640115.20.0uncharacterized protein LOC4324340
TrEMBLA0A0E0JSN70.0A0A0E0JSN7_ORYPU; Uncharacterized protein
STRINGOPUNC01G40380.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45722960
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28700.11e-13AGAMOUS-like 46