PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G41290.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 234aa    MW: 25091.5 Da    PI: 8.9593
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G41290.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM105.28.4e-33241481128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyat.gkrknr.atksgyWkatgkdkev 92 
                      lp GfrF+Ptdeel+ +yL++kv + +l++ +vi+ +d+ +++PwdL      ++ e yfF+k +++  + g   +r a  +g+W+a+gk+k v
  OPUNC01G41290.1  24 LPIGFRFRPTDEELLLHYLRRKVMSCPLPA-DVIPVADLARTHPWDLL--PGDGDGERYFFHKPATSCWRrGGGGSRaAGGDGVWRASGKEKLV 114
                      699***************************.99**************4..34567799****99988764378888846679***********9 PP

              NAM  93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++   ++ vg k+tLvf+   ++ g +tdW mheyrl
  OPUNC01G41290.1 115 VAPrCKRPVGAKRTLVFF---RRGGARTDWAMHEYRL 148
                      99867889**********...567889********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.27E-4318175IPR003441NAC domain
PROSITE profilePS5100543.68724175IPR003441NAC domain
PfamPF023651.4E-2125148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MAVVTAEAAG GGGGGGYRMV QAGLPIGFRF RPTDEELLLH YLRRKVMSCP LPADVIPVAD  60
LARTHPWDLL PGDGDGERYF FHKPATSCWR RGGGGSRAAG GDGVWRASGK EKLVVAPRCK  120
RPVGAKRTLV FFRRGGARTD WAMHEYRLLP AALHAAADDH PPEANDWVVC RIFKKTTPAH  180
RRSPPCIRGT PRRRAAAAAD DMPSSPSSCV TDGGDMGEEG EESSSCSVVA SNCP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-261918112171NO APICAL MERISTEM PROTEIN
1ut4_B2e-261918112171NO APICAL MERISTEM PROTEIN
1ut7_A2e-261918112171NO APICAL MERISTEM PROTEIN
1ut7_B2e-261918112171NO APICAL MERISTEM PROTEIN
4dul_A2e-261918112171NAC domain-containing protein 19
4dul_B2e-261918112171NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0674500.0AK067450.1 Oryza sativa Japonica Group cDNA clone:J013106M04, full insert sequence.
GenBankAK0684460.0AK068446.1 Oryza sativa Japonica Group cDNA clone:J013153H06, full insert sequence.
GenBankAK2889420.0AK288942.1 Oryza sativa Japonica Group cDNA, clone: J090083D07, full insert sequence.
GenBankCT8295910.0CT829591.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA017E23, full insert sequence.
GenBankCT8295920.0CT829592.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA111B01, full insert sequence.
GenBankCU4067440.0CU406744.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C109J05, full insert sequence.
GenBankGU1203510.0GU120351.1 Oryza sativa Japonica Group clone KCG153D01 NAC4 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627804.16e-91NAC domain-containing protein 83
TrEMBLA0A0E0JT051e-168A0A0E0JT05_ORYPU; Uncharacterized protein
STRINGOPUNC01G41290.11e-169(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82333047
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.13e-34NAC domain containing protein 83