PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G41620.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 391aa    MW: 40765.9 Da    PI: 5.9214
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G41620.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.59e-12197239754
                      HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
              HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                      ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A+eY+k+L
  OPUNC01G41620.1 197 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIEYLKEL 239
                      79*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.764190239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.28E-16193256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-9196239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-14196245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.0E-16197252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.51E-13197243No hitNo description
CDDcd048738.57E-5311371No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MDESEAAAAA AKMDELAGGG SGGGGGGDWS YLAADALAAA SFTAFPFHHH HHHRDVLSSS  60
TPSSLLLNMD AAAAAMFDFQ AAFPSSSVPP PPTTTTLPSF HDFASSNPFD DAPPPFLAPP  120
GQKLGFMGAP GGTFGGGMGW DDDDEIEQSV DASSMGVSAS LENAAPVAAG GGGGGGGGGG  180
GGGGRGKKKG MPAKNLMAER RRRKKLNDRL YMLRSVVPKI SKMDRASILG DAIEYLKELL  240
QRINDLHNEL ESAPSSSLTG PSSASFHPST PTLQTFPGRV KEELCPTSFP SPSGQQATVE  300
VRMREGHAVN IHMFCARRPG ILMSTLRALD SLGLGIEQAV ISCFNGFAMD VFRAEQCRDG  360
PGLGPEEIKT VLLHSAGLQN AMRTDEMRLA I
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1186204KKKGMPAKNLMAERRRRKK
2198205ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1025940.0AK102594.1 Oryza sativa Japonica Group cDNA clone:J033098G23, full insert sequence.
GenBankHQ8588780.0HQ858878.1 Oryza sativa Japonica Group isolate UT1858 ABIVP1 transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651003.10.0transcription factor ICE1
TrEMBLA0A0E0JT500.0A0A0E0JT50_ORYPU; Uncharacterized protein
STRINGOPUNC01G41620.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP164637101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.47e-94bHLH family protein