PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC01G42000.2

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

HB-other

Protein Properties

Length: 1167aa MW: 127836 Da PI: 8.8215

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC01G42000.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	21.3	4.6e-07	74	130	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +++R ++++ ++ +++lF+++ ++ ++e +e++++ g+t +qV+ +F +R++ +k OPUNC01G42000.2 74 KKPRDLLNPKAVKSMQSLFAMKDTIGKKETREISASFGVTVTQVREFFASQRTRVRK 130 799***************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	9.718	71	131	IPR001356	Homeobox domain
SMART	SM00389	0.0028	73	135	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	5.0E-5	74	137	IPR009057	Homeodomain-like
CDD	cd00086	3.80E-4	74	130	No hit	No description
SuperFamily	SSF46689	8.13E-6	74	133	IPR009057	Homeodomain-like
Pfam	PF00046	1.4E-4	74	130	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009911	Biological Process	positive regulation of flower development
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1167 aa Download sequence Send to blast
MELVPFKPEA GSLVESGGVA YGDSIPAMVA AQQEVLHAQV DQLQRLVVAQ CRLTGVNPLA 60 QEMAAGALSI KIGKKPRDLL NPKAVKSMQS LFAMKDTIGK KETREISASF GVTVTQVREF 120 FASQRTRVRK FVRLSREKAL RIESSKAPDN VCTISTEQTP VDIEAHAQVI EPLRTLEPLE 180 AQQISLPHLV VPQISLQFPV VPQSCAIPVA PTGVMQPTEA KTNPDPIQKE TKQEEVAAGV 240 ESEDKKFLES IFVLMRKENT FSGQVKLMES ILQINNVTVL SWFLTMGGLA IVSTWLGQAV 300 TEEQTTVILV IFKVLLHLPL HKALPAHMST VLQTINRLRF YRTQDISSKA RNLLSRLSKV 360 LVRSQALKKS QKDLICKQRI SEILRDESWK SEVDMTEDIL ALTDDASESR MPEPRKTPLL 420 LTASADESNK KSSLQTKSKE RRKVLLVEHP NRKAAGKNVN PVRGTSTNNS RPLSADDIQK 480 AKMRAMFMQE KYGKVDTSKV TDKPHTMEIQ KPSGLVDSNV PLVPRSPLTS IIKPPVDPSP 540 STSKQSTLSP PDKPETAVSS KLNVTAKENF IEKLDSKRVV WQIPPEVWID PAWSLGAGEN 600 SKEFEVQTQR NRREKETFYA SLKDIPLNPK GPWDVEMDFD DSLTLEIPIE QPPDADAMET 660 ESVSTAPPNI VVPVVDKQIG STSSVSPAVA AGTNGAASEP DLELLAVLLK NPQLVFALTS 720 NQGGTLPSEQ TVALLDMLKQ TGLGLSELVN SLANNSGVQK EPESGPEVIP ASLPSPTPPK 780 DLVARDGWSS EFPSQARTQN LQHAHLPNRA NAPPIASSVQ QSFSNVVSSL PSQPYASASA 840 LPAQIRTNIT SFPQSMISVN PSTQHVAPTN SLLSRATVHQ HTQSYALTSD PVAVATHHQP 900 AVNKLAHEVQ NISHPAVSHS SLAESHASYT SYTWQSSVDT IAANGRNATP DRWAAPARTT 960 NSFNVSPSNS NPVTYPNQNA YSNHSTQAPT YNAYGSAPVS SHSLLPGQGL DRNGYTHAAG 1020 YQTTTARDAL RRNSRSPELG AGAVYGSSSQ GYVPEPSRQW NYGQQSYNPE PSSRQWSSGQ 1080 QSYNTVTAEP SRQWSSGQQS YNNPAEPSRQ WSSSAQPSYN PEPSRPWNSG HQSQNPEASR 1140 QWSHHHGKQE RYNPTDGRNS YDQHWRR

Sequence ? help Back to Top

Protein Sequence Length: 1167 aa Download sequence Send to blast

MELVPFKPEA GSLVESGGVA YGDSIPAMVA AQQEVLHAQV DQLQRLVVAQ CRLTGVNPLA  60
QEMAAGALSI KIGKKPRDLL NPKAVKSMQS LFAMKDTIGK KETREISASF GVTVTQVREF  120
FASQRTRVRK FVRLSREKAL RIESSKAPDN VCTISTEQTP VDIEAHAQVI EPLRTLEPLE  180
AQQISLPHLV VPQISLQFPV VPQSCAIPVA PTGVMQPTEA KTNPDPIQKE TKQEEVAAGV  240
ESEDKKFLES IFVLMRKENT FSGQVKLMES ILQINNVTVL SWFLTMGGLA IVSTWLGQAV  300
TEEQTTVILV IFKVLLHLPL HKALPAHMST VLQTINRLRF YRTQDISSKA RNLLSRLSKV  360
LVRSQALKKS QKDLICKQRI SEILRDESWK SEVDMTEDIL ALTDDASESR MPEPRKTPLL  420
LTASADESNK KSSLQTKSKE RRKVLLVEHP NRKAAGKNVN PVRGTSTNNS RPLSADDIQK  480
AKMRAMFMQE KYGKVDTSKV TDKPHTMEIQ KPSGLVDSNV PLVPRSPLTS IIKPPVDPSP  540
STSKQSTLSP PDKPETAVSS KLNVTAKENF IEKLDSKRVV WQIPPEVWID PAWSLGAGEN  600
SKEFEVQTQR NRREKETFYA SLKDIPLNPK GPWDVEMDFD DSLTLEIPIE QPPDADAMET  660
ESVSTAPPNI VVPVVDKQIG STSSVSPAVA AGTNGAASEP DLELLAVLLK NPQLVFALTS  720
NQGGTLPSEQ TVALLDMLKQ TGLGLSELVN SLANNSGVQK EPESGPEVIP ASLPSPTPPK  780
DLVARDGWSS EFPSQARTQN LQHAHLPNRA NAPPIASSVQ QSFSNVVSSL PSQPYASASA  840
LPAQIRTNIT SFPQSMISVN PSTQHVAPTN SLLSRATVHQ HTQSYALTSD PVAVATHHQP  900
AVNKLAHEVQ NISHPAVSHS SLAESHASYT SYTWQSSVDT IAANGRNATP DRWAAPARTT  960
NSFNVSPSNS NPVTYPNQNA YSNHSTQAPT YNAYGSAPVS SHSLLPGQGL DRNGYTHAAG  1020
YQTTTARDAL RRNSRSPELG AGAVYGSSSQ GYVPEPSRQW NYGQQSYNPE PSSRQWSSGQ  1080
QSYNTVTAEP SRQWSSGQQS YNNPAEPSRQ WSSSAQPSYN PEPSRPWNSG HQSQNPEASR  1140
QWSHHHGKQE RYNPTDGRNS YDQHWRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK066698	0.0	AK066698.1 Oryza sativa Japonica Group cDNA clone:J013073H18, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015620702.1	0.0	homeobox protein LUMINIDEPENDENS
TrEMBL	A0A0E0JTA1	0.0	A0A0E0JTA1_ORYPU; Uncharacterized protein
STRING	OPUNC01G42000.2	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8043	30	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	1e-158	HB-other family protein