PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G42190.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 473aa    MW: 50186.1 Da    PI: 7.9919
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G42190.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.84.4e-0679101123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++Cgk F r  nL+ H r H
  OPUNC01G42190.1  79 FVCEICGKGFQRDQNLQLHRRGH 101
                      89*******************88 PP
2zf-C2H212.50.00046189207523
                      TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                      dCg++Fsr++++++H   +
  OPUNC01G42190.1 189 DCGTVFSRRDSFVTHRAFC 207
                      9**************8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.23E-678101No hitNo description
PROSITE profilePS5015711.61479101IPR007087Zinc finger, C2H2
SMARTSM003550.01279101IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.3E-579101IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028081101IPR007087Zinc finger, C2H2
SMARTSM00355240124154IPR015880Zinc finger, C2H2-like
SuperFamilySSF576675.23E-6154179No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MEEFEMQQPY YSKLLLDGPL KIASVDESDL QLVAGVSSDP PPAPPPAVKK KKRSLPGTPD  60
PSAEVVALSP RTLLATNRFV CEICGKGFQR DQNLQLHRRG HNLPWKLRQR GAGGAGEPPR  120
KRVYVCPEAS CVHHSPSRAL GDLTGIKKHF CRKHGEKKWK CDRCCKRYAV HSDWKAHSKV  180
CGTREYKCDC GTVFSRRDSF VTHRAFCDAL AQENNKLAQP MNMAAVTSAL QGQQQAHHLV  240
LPSQPVSDDD DAAGYGLAAD VKSPHLKMFP DVDNTPLLPA LSMAGCMLSS LGARAAPSSS  300
SPFLHIHGRN LGMDAPSDAA TGFPPPAAGS AAIMSATALL QKAAELGATT STSCYGGVAF  360
PSMGIAGGID RIPTIGHHLG PYDDVVPAAL GQTATQLVGF DLGGLLPGQL YGGGGAMTRA  420
IGSLMHGGDQ HVGVVDRRRG EGVRVVDYMG VDDDDHGSFD GVGPFGPHIG PWA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C7e-33155222370Zinc finger protein JACKDAW
5b3h_F7e-33155222370Zinc finger protein JACKDAW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0703900.0AK070390.1 Oryza sativa Japonica Group cDNA clone:J023050E05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635962.10.0protein indeterminate-domain 12
TrEMBLA0A0E0JTC80.0A0A0E0JTC8_ORYPU; Uncharacterized protein
STRINGOPUNC01G42190.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125542534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-101indeterminate(ID)-domain 2