PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G42700.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 207aa    MW: 22954.7 Da    PI: 7.008
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G42700.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM64.53.3e-20271543128
              NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk..atgkdkevls 94 
                      +G+ F+Pt++el+ ++L+++++g   +++ ++ e+d + + Pw+L ++ +++++e +fFs r+++ ++ +r+      g W   +t + ++v +
  OPUNC01G42700.1  27 VGVGFEPTEDELMLHFLRPQLRGFAPRVAGAVVEADPCGAAPWELLAR-HGRSEEGFFFSARARRRPSVRRTVAGGGGGAWMhsSTKNGQSVSD 119
                      79***********************9**999**************744.4566789**********998888888889***8334455566666 PP

              NAM  95 kkgelvglkktLvfy.kgrapkgektdWvmheyrl 128
                       +  + +++    fy +g+  + ++t W+m ey++
  OPUNC01G42700.1 120 LGVVVRWCRINYCFYvRGEMGQQRSTGWMMAEYEI 154
                      688889*********888999999*********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100527.0525180IPR003441NAC domain
SuperFamilySSF1019419.02E-3226180IPR003441NAC domain
PfamPF023651.1E-1227154IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MGEEMNLIRE DEFGGGGGDD DDDHCVVGVG FEPTEDELML HFLRPQLRGF APRVAGAVVE  60
ADPCGAAPWE LLARHGRSEE GFFFSARARR RPSVRRTVAG GGGGAWMHSS TKNGQSVSDL  120
GVVVRWCRIN YCFYVRGEMG QQRSTGWMMA EYEITDPRCY RRADDGEEDD FWVLCHVRKS  180
SRPSAAKISP TKAARRRKPA AADVRAA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0710600.0AK071060.1 Oryza sativa Japonica Group cDNA clone:J023080K20, full insert sequence.
GenBankAP0036870.0AP003687.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0660F12.
GenBankAP0040730.0AP004073.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0614D08.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641921.11e-115NAC domain-containing protein 48-like isoform X1
RefseqXP_015641928.11e-115NAC domain-containing protein 48-like isoform X2
TrEMBLA0A0E0JTJ21e-150A0A0E0JTJ2_ORYPU; Uncharacterized protein
STRINGOPUNC01G42700.11e-150(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137612528