PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G42770.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 292aa    MW: 32289.6 Da    PI: 6.2472
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G42770.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS304.32.9e-931287106374
             GRAS 106 vegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpg 199
                      +e+e+ vH+iD++    +QW+ Ll+ La+Rpegpp+lR+T v++    +k+ l++t+  L+k Ae+l+vpf+fn+ v++rl++l++e+Lrvk+g
  OPUNC01G42770.1   1 MESEKIVHVIDLGGADATQWLELLHLLAARPEGPPHLRLTSVHE----HKDLLSQTAMALTKEAERLDVPFQFNP-VVSRLDALDVESLRVKTG 89 
                      68899***************************************....9**************************.7***************** PP

             GRAS 200 EalaVnlvlqlhrll.......................desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfds 270
                      Eala++++l+lh ll                       +   +++s+ d++L ++++lsPkv+vv+eqea+hn++ + erf+eal+yy+alfd+
  OPUNC01G42770.1  90 EALAICSSLHLHCLLasdddatagaavaggdkerrspeSGLSPSTSRADAFLGALWGLSPKVMVVTEQEASHNAAGLTERFVEALNYYAALFDC 183
                      *********************************9997522233344789********************************************* PP

             GRAS 271 leaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkd 364
                      le++++r s er+ vEr llg+ei+n+vac g errerhe+le+W +rle aGF+ vpls++a  qa+++ +  + dg++v ee+g ++l+W+d
  OPUNC01G42770.1 184 LEVGAARGSVERARVERWLLGEEIKNIVACDGGERRERHERLERWARRLEGAGFGRVPLSYYALLQARRVAQGLGCDGFKVREEKGNFFLCWQD 277
                      ********************************************************************************************** PP

             GRAS 365 rpLvsvSaWr 374
                      r+L+svSaWr
  OPUNC01G42770.1 278 RALFSVSAWR 287
                      *********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.1671267IPR005202Transcription factor GRAS
PfamPF035149.9E-911287IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MESEKIVHVI DLGGADATQW LELLHLLAAR PEGPPHLRLT SVHEHKDLLS QTAMALTKEA  60
ERLDVPFQFN PVVSRLDALD VESLRVKTGE ALAICSSLHL HCLLASDDDA TAGAAVAGGD  120
KERRSPESGL SPSTSRADAF LGALWGLSPK VMVVTEQEAS HNAAGLTERF VEALNYYAAL  180
FDCLEVGAAR GSVERARVER WLLGEEIKNI VACDGGERRE RHERLERWAR RLEGAGFGRV  240
PLSYYALLQA RRVAQGLGCD GFKVREEKGN FFLCWQDRAL FSVSAWRGRR FD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A7e-451289124381Protein SCARECROW
5b3h_A7e-451289123380Protein SCARECROW
5b3h_D7e-451289123380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2875400.0AK287540.1 Oryza sativa Japonica Group cDNA, clone: J065011K01, full insert sequence.
GenBankAP0032590.0AP003259.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0466H10.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004971220.10.0scarecrow-like protein 3
RefseqXP_022682001.10.0scarecrow-like protein 3
SwissprotQ9LPR81e-120SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A0E0JTK40.0A0A0E0JTK4_ORYPU; Uncharacterized protein
STRINGOPUNC01G42770.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.15e-96scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]