PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G43150.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family SRS
Protein Properties Length: 490aa    MW: 50077 Da    PI: 6.9173
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G43150.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702226.16.6e-702163765154
           DUF702   5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkqsalsstklssaesk 97 
                      +a+CqdCGnqakkdC h+RCRtCCksrgfdC+thvkstWvpaa+rrerqq + +ass+ a+++ a+aas +k+    ++q+++s+t++s+a+++
  OPUNC01G43150.1 216 AATCQDCGNQAKKDCGHQRCRTCCKSRGFDCSTHVKSTWVPAARRRERQQLTGSASSSPATAStAAAASASKKPRLLTSQTTTSHTSTSNATTP 309
                      579************************************************9999888777664344444444445699999************ PP

           DUF702  98 keletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                      ++++t+s          lP++v+++avfrcvrv+s+ddge+e+aYq++v+i+GhvfkG+LydqG+++
  OPUNC01G43150.1 310 RSFDTTSshqdasfresLPRQVRAPAVFRCVRVTSIDDGEDEYAYQATVTINGHVFKGFLYDQGVDD 376
                      ****99999*******************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051429.6E-64217375IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016239.5E-27218260IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016246.2E-29327374IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0048364Biological Processroot development
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MAGAEAAEEA RHQAGCCSSS RRESEGRFAA KSADISVASG RRFPSDTGAF ADWVASSAAA  60
AAAGRGDDLS LGFNATAAAA TPSGASLAAG LWGPASSSRQ AALNYGMADV GMVVVTPAAS  120
FHHTHHHHHH HEAAAAAAAA AAADPIFPLL SAGPCVLDPD KSAPSGSAIQ FWQPPPQSPS  180
SAAGGNPNPS ASAFPYLKKP LPMLDTGGGS SGSGAAATCQ DCGNQAKKDC GHQRCRTCCK  240
SRGFDCSTHV KSTWVPAARR RERQQLTGSA SSSPATASTA AAASASKKPR LLTSQTTTSH  300
TSTSNATTPR SFDTTSSHQD ASFRESLPRQ VRAPAVFRCV RVTSIDDGED EYAYQATVTI  360
NGHVFKGFLY DQGVDDGRGL AATSNDDSTA GVPNISELHL GGNAMREGGS TMVHSDLYDG  420
GGGGGGGQHI LGGSSYGVQA ILAVGVTSSR AADGKGRQDH GGFLLPSLQF FLGESPYLFL  480
VPDPIEDDKM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1024440.0AK102444.1 Oryza sativa Japonica Group cDNA clone:J033093N15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622050.11e-169protein LATERAL ROOT PRIMORDIUM 1
TrEMBLA0A0E0JTQ80.0A0A0E0JTQ8_ORYPU; Uncharacterized protein
STRINGOPUNC01G43150.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35793679
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.24e-55Lateral root primordium (LRP) protein-related