PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G44760.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 173aa    MW: 19180.9 Da    PI: 8.1489
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G44760.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA27.83.4e-092443120
             GATA  1 CsnCgttkTplWRrgpdgnk 20
                     C+ C+ttkTplWR gp g+k
  OPUNC01G44760.1 24 CADCHTTKTPLWRGGPGGPK 43
                     ****************9997 PP
2GATA23.11e-0774882135
             GATA 21 tLCnaCGlyyrkkgl 35
                     +LCnaCG++yrk+++
  OPUNC01G44760.1 74 SLCNACGIRYRKRRR 88
                     5***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501149.2491841IPR000679Zinc finger, GATA-type
SMARTSM004017.6E-518107IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.56E-71937No hitNo description
Gene3DG3DSA:3.30.50.109.0E-72243IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.04E-82388No hitNo description
PfamPF003201.1E-62443IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.56E-76987No hitNo description
Gene3DG3DSA:3.30.50.103.2E-47388IPR013088Zinc finger, NHR/GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MEMDSSSSPV DKVDPDECNG SKACADCHTT KTPLWRGGPG GPKVNIHASS FGFCVLLCCF  60
DLIRDPIHDP FFQSLCNACG IRYRKRRRAA LGLDSAATAT EGAEQQQKKK AKKEKAEEDD  120
EEDVTMELHT VGFRSKDAAV LKQRRRMRRR KCLGEEERAA ILLMALSSGV IYA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18387RKRRR
2142148QRRRMRR
3143150RRRMRRRK
4144149RRMRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641177.16e-67GATA transcription factor 16
TrEMBLA0A0E0JUC31e-125A0A0E0JUC3_ORYPU; Uncharacterized protein
STRINGOPUNC01G44760.11e-126(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24183892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.12e-18GATA transcription factor 16