PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G44800.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 238aa    MW: 26194.9 Da    PI: 10.1796
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G44800.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.88e-16550147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W ++Ed ll ++v+q+G+++W+ I++ ++ gR++k+c++rw + 
  OPUNC01G44800.1  5 KGSWRADEDALLTRLVAQHGPHRWSIISAAIP-GRSGKSCRLRWCNQ 50
                     799*****************************.***********985 PP
2Myb_DNA-binding60.24.5e-1959101347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++T++Ed ll+ a++++G++ W+tIar ++ gRt++++k++w++ 
  OPUNC01G44800.1  59 PFTPQEDALLAAAHARHGNK-WATIARLLP-GRTDNSVKNHWNSN 101
                      89******************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.075155IPR017930Myb domain
SuperFamilySSF466891.72E-29198IPR009057Homeodomain-like
SMARTSM007179.4E-15453IPR001005SANT/Myb domain
PfamPF002494.0E-15550IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-22657IPR009057Homeodomain-like
CDDcd001672.34E-13749No hitNo description
SMARTSM007171.2E-1556104IPR001005SANT/Myb domain
PROSITE profilePS5129419.91456106IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.7E-2358104IPR009057Homeodomain-like
PfamPF002491.4E-1659101IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MSKKKGSWRA DEDALLTRLV AQHGPHRWSI ISAAIPGRSG KSCRLRWCNQ LSPAVQHRPF  60
TPQEDALLAA AHARHGNKWA TIARLLPGRT DNSVKNHWNS NLRRCLRRQA KLKLAASASS  120
TKSKEPLLQL ADPIPADYIV LNDDDDEPDR VTPPAIIQDH QETPSLTLSL GLSLPGAAAE  180
VEVAPPRAAE IDGSRSSSAS RVMLQVMRQM VREEVQRHTA QLAYSLMAMA TCSCRPPN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-3551044103MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1106311e-164AK110631.1 Oryza sativa Japonica Group cDNA clone:002-169-B11, full insert sequence.
GenBankAP0032281e-164AP003228.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0020E09.
GenBankAP0149571e-164AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126091e-164CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878300.13e-94transcription factor MYB44
TrEMBLA0A0E0JUC81e-173A0A0E0JUC8_ORYPU; Uncharacterized protein
STRINGOPUNC01G44800.11e-174(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135442731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.16e-47myb domain protein 73