PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC02G00570.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 341aa    MW: 37378.7 Da    PI: 7.7985
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC02G00570.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.22.8e-1656103148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g W++eEd++l d++ ++G g+W++++++ g+ R +k+c++rw +yl
  OPUNC02G00570.1  56 KGLWSPEEDQRLRDYIVKHGLGCWSAVPAKAGLQRNGKSCRLRWINYL 103
                      678*******************************************97 PP
2Myb_DNA-binding52.61e-16109154148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg +++eE+++ +++ ++lG++ W+ Ia +++ gRt++++k++w++yl
  OPUNC02G00570.1 109 RGMFSQEEEDIVINLQAKLGNK-WSQIAMHLP-GRTDNEVKNYWNSYL 154
                      788*******************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.78551103IPR017930Myb domain
SuperFamilySSF466894.77E-2953150IPR009057Homeodomain-like
SMARTSM007177.8E-1255105IPR001005SANT/Myb domain
PfamPF002492.4E-1456103IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.4E-2257110IPR009057Homeodomain-like
CDDcd001677.78E-1159103No hitNo description
PROSITE profilePS5129425.69104158IPR017930Myb domain
SMARTSM007172.2E-15108156IPR001005SANT/Myb domain
PfamPF002495.5E-15109154IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-25111158IPR009057Homeodomain-like
CDDcd001671.27E-12112154No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MVLKGLAQTL LLQQLILRQD QYTGLQEEEQ EEIFREGKKR AMGCRSCDKP KMNYRKGLWS  60
PEEDQRLRDY IVKHGLGCWS AVPAKAGLQR NGKSCRLRWI NYLRPGLKRG MFSQEEEDIV  120
INLQAKLGNK WSQIAMHLPG RTDNEVKNYW NSYLKKRVMQ AQGSIPNNLA AAATEVTSMS  180
TTEPPSLHHH HHHHHHHHPI KNSSGSTTTS HDQDANLSSG GSHGGISAPA PVAEPFDQQP  240
KNFVFTGDWM PVSAATAAAG QESYSISAQH WPASTASSGN VTPSHAGAFG DQMSGSYGAL  300
QQQQHQSSAA AATMAGGGYF DLLNMGDIYG GFAATSDDLL F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-255015823128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0040900.0AP004090.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1399_H05.
GenBankAP0048670.0AP004867.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0036E06.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624260.10.0transcription factor MYB24
SwissprotQ8LPH63e-52MYB86_ARATH; Transcription factor MYB86
TrEMBLA0A0E0JUM20.0A0A0E0JUM2_ORYPU; Uncharacterized protein
STRINGOPUNC02G00570.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122962735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.18e-56myb domain protein 86