PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC02G00620.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 898aa    MW: 101465 Da    PI: 7.6313
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC02G00620.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.16.7e-05589611123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C+ Cg sF  + +Lk+H ++H
  OPUNC02G00620.1 589 HTCKECGASFQKPAHLKQHVQSH 611
                      79******************999 PP
2zf-C2H220.51.2e-06617641123
                      EEET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                      + Cp  dC+ s+ rk++L+rH+ +H
  OPUNC02G00620.1 617 FICPleDCPFSYIRKDHLNRHMLKH 641
                      78*********************99 PP
3zf-C2H213.70.00018646671123
                      EEET..TTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                      ++C+   Cg+ F+ k n++rH +  H
  OPUNC02G00620.1 646 FTCSvdGCGRKFNIKANMQRHVKEiH 671
                      89********************9988 PP
4zf-C2H217.21.4e-05683707123
                      EEET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                      ++C+   C+k+F+  s Lk+H  +H
  OPUNC02G00620.1 683 FVCKeeGCNKVFKYASKLKKHEESH 707
                      89*******************9988 PP
5zf-C2H216.42.5e-05774798223
                      EET..TTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                      kC+   C  sFs+ksnL++Hi+  H
  OPUNC02G00620.1 774 KCSfeGCECSFSNKSNLTKHIKAsH 798
                      688889***************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS513755.0643565IPR002885Pentatricopeptide repeat
SuperFamilySSF484529.32E-54795IPR011990Tetratricopeptide-like helical domain
Gene3DG3DSA:1.25.40.102.5E-866100IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513758.73666100IPR002885Pentatricopeptide repeat
PfamPF015351.36897IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.131136170IPR002885Pentatricopeptide repeat
PfamPF015352.7E-4138164IPR002885Pentatricopeptide repeat
PfamPF015350.087169196IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.008198232IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.9E-4200233IPR002885Pentatricopeptide repeat
PfamPF015351.0E-4200229IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.102.5E-8231232IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513757.859268298IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.102.5E-8271296IPR011990Tetratricopeptide-like helical domain
PfamPF015350.0061273297IPR002885Pentatricopeptide repeat
PfamPF130411.1E-10298346IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.718299333IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007564.5E-6301334IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.219334364IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007560.001336363IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.873370400IPR002885Pentatricopeptide repeat
PfamPF015350.016373397IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.102.5E-8400465IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513755.579402432IPR002885Pentatricopeptide repeat
SuperFamilySSF484529.32E-5432465IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513757.717436470IPR002885Pentatricopeptide repeat
PfamPF015351.3445467IPR002885Pentatricopeptide repeat
SMARTSM0035524543565IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.608.6E-5586608IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015713.235589616IPR007087Zinc finger, C2H2
SMARTSM003550.005589611IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280591611IPR007087Zinc finger, C2H2
SuperFamilySSF576672.02E-10601643No hitNo description
Gene3DG3DSA:3.30.160.606.3E-11609643IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.808617646IPR007087Zinc finger, C2H2
SMARTSM003555.5E-4617641IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280619641IPR007087Zinc finger, C2H2
SuperFamilySSF576673.92E-8627677No hitNo description
Gene3DG3DSA:3.30.160.604.5E-8644673IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.175646676IPR007087Zinc finger, C2H2
SMARTSM003553.2E-4646671IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280648671IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.0E-7678707IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.284683707IPR007087Zinc finger, C2H2
SMARTSM003550.0021683707IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280685707IPR007087Zinc finger, C2H2
SMARTSM003555.6715740IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280717740IPR007087Zinc finger, C2H2
SMARTSM0035515743764IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.33E-8755811No hitNo description
PROSITE profilePS5015712.508773803IPR007087Zinc finger, C2H2
SMARTSM003550.002773798IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.6E-5774798IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280775798IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.8E-4799826IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003555.2804830IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280806830IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 898 aa     Download sequence    Send to blast
MNRSICHHLL TQCKTIRELQ RIHAQALAHG LHPNHQSISC KIFRSYAEFG RPADAHRLFD  60
EIPHPDIISF TSLMSLHLQL DHHQKAISVF SRAIASGHRP DGFAAVGALS ASGGLGDQHI  120
GSAVHGLIFR CGLDSELVVC NALIDMYCRC GKFEPAQAVF NGMLLKDEVT WGSMLYGYMK  180
CVGVDSALSF FYQMPMKSTV SWTALITGHV QDKQPIQALE LFGRMLLDGH RPTHITVVGV  240
LSACADIGAL DLGRAIHGYG SKSNATTNII ITNALIDMYA KSGSIAMAFS VFEEVQMKDA  300
FTWTTMISSF TVQGDGRKAV ELFWDMLRSG ILPNSVTFVS VLSACSHAGL IQEGRELFDK  360
MREVYHTDPR LEHYGCMVDL LGRGGLLEEA ESLIDHMDVE PDIVIWRSLL SACLAHGNDR  420
LAEIAGKEII KREPGDDGVY VLLWNMYASS NRWKKALDVR KQMLSRKIYK KPGCSWIEVD  480
GVVHEFLVED KTHDARREIY GTLEDMARHL KMDPLPSPLM CSGDEIDGDT RVEATHQRDI  540
RRYKCEFCTV VRSKKCLIRA HMVAHHKEEL DKSEIYKSNG EKVVHEGDHT CKECGASFQK  600
PAHLKQHVQS HSDERSFICP LEDCPFSYIR KDHLNRHMLK HQGKLFTCSV DGCGRKFNIK  660
ANMQRHVKEI HEDENATKSN QQFVCKEEGC NKVFKYASKL KKHEESHVKL DYVEVVCCEP  720
GCMKTFTNVE CLRAHNQDCH QYVQCDICGE KHLKKNIKRH LRAHEEVPST ARIKCSFEGC  780
ECSFSNKSNL TKHIKASHDQ EKPFACRITG CEKVFPYKHV RDNHEKSSAH VYTQANFMEM  840
DEQLRSCPRG GRKRKAVTVE TLTRKRVTMH GDASSLDNGT EYLRWLLSGG DDDSSQTH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5iww_D3e-552046810333PLS9-PPR
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878917.10.0pentatricopeptide repeat-containing protein At2g22410, mitochondrial
TrEMBLA0A0E0JUM80.0A0A0E0JUM8_ORYPU; Uncharacterized protein
STRINGOPUNC02G00620.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23823882
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-114transcription factor IIIA