PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC02G00620.2
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 337aa    MW: 38833.9 Da    PI: 8.2017
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC02G00620.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.72.1e-052850123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C+ Cg sF  + +Lk+H ++H
  OPUNC02G00620.2 28 HTCKECGASFQKPAHLKQHVQSH 50
                     79******************999 PP
2zf-C2H222.23.8e-075680123
                     EEET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCp..dCgksFsrksnLkrHirtH 23
                     + Cp  dC+ s+ rk++L+rH+ +H
  OPUNC02G00620.2 56 FICPleDCPFSYIRKDHLNRHMLKH 80
                     78*********************99 PP
3zf-C2H215.35.6e-0585110123
                      EEET..TTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                      ++C+   Cg+ F+ k n++rH +  H
  OPUNC02G00620.2  85 FTCSvdGCGRKFNIKANMQRHVKEiH 110
                      89********************9988 PP
4zf-C2H218.84.4e-06122146123
                      EEET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                      ++C+   C+k+F+  s Lk+H  +H
  OPUNC02G00620.2 122 FVCKeeGCNKVFKYASKLKKHEESH 146
                      89*******************9988 PP
5zf-C2H218.17.6e-06213237223
                      EET..TTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                      kC+   C  sFs+ksnL++Hi+  H
  OPUNC02G00620.2 213 KCSfeGCECSFSNKSNLTKHIKAsH 237
                      688899***************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.6E-52547IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0052850IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.2352855IPR007087Zinc finger, C2H2
PROSITE patternPS0002803050IPR007087Zinc finger, C2H2
SuperFamilySSF576676.62E-114082No hitNo description
Gene3DG3DSA:3.30.160.601.8E-114882IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003555.5E-45680IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.8085685IPR007087Zinc finger, C2H2
PROSITE patternPS0002805880IPR007087Zinc finger, C2H2
SuperFamilySSF576672.24E-866116No hitNo description
Gene3DG3DSA:3.30.160.601.3E-883112IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003553.2E-485110IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.17585115IPR007087Zinc finger, C2H2
PROSITE patternPS00028087110IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.2E-7117146IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.284122146IPR007087Zinc finger, C2H2
SMARTSM003550.0021122146IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280124146IPR007087Zinc finger, C2H2
SMARTSM003555.6154179IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280156179IPR007087Zinc finger, C2H2
SMARTSM0035515182203IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.75E-8194250No hitNo description
SMARTSM003550.002212237IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.508212242IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.0E-6213237IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280214237IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.5E-4238265IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003555.2243269IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280245269IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MVAHHKEELD KSEIYKSNGE KVVHEGDHTC KECGASFQKP AHLKQHVQSH SDERSFICPL  60
EDCPFSYIRK DHLNRHMLKH QGKLFTCSVD GCGRKFNIKA NMQRHVKEIH EDENATKSNQ  120
QFVCKEEGCN KVFKYASKLK KHEESHVKLD YVEVVCCEPG CMKTFTNVEC LRAHNQDCHQ  180
YVQCDICGEK HLKKNIKRHL RAHEEVPSTA RIKCSFEGCE CSFSNKSNLT KHIKASHDQE  240
KPFACRITGC EKVFPYKHVR DNHEKSSAHV YTQANFMEMD EQLRSCPRGG RKRKAVTVET  300
LTRKRVTMHG DASSLDNGTE YLRWLLSGGD DDSSQTH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A3e-183221819174PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D3e-183221819174PROTEIN (TRANSCRIPTION FACTOR IIIA)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1004730.0AK100473.1 Oryza sativa Japonica Group cDNA clone:J023093M20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626855.10.0transcription factor IIIA isoform X1
SwissprotQ84MZ41e-107TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A0E0JUM80.0A0A0E0JUM8_ORYPU; Uncharacterized protein
TrEMBLA0A0E0JUM90.0A0A0E0JUM9_ORYPU; Uncharacterized protein
STRINGOPUNC02G00620.10.0(Oryza punctata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-110transcription factor IIIA