PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC02G02970.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

GATA

Protein Properties

Length: 333aa MW: 35498.2 Da PI: 4.6281

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC02G02970.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	51.3	1.6e-16	241	278	1	36
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkglk 36 C++Cg Tp++Rrgpdg++tLCnaCGl+++ kg++ OPUNC02G02970.1 241 CHHCGINAasTPMMRRGPDGPRTLCNACGLMWANKGTM 278 **977777***********************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00979	2.2E-7	105	140	IPR010399	Tify domain
PROSITE profile	PS51320	12.702	105	140	IPR010399	Tify domain
Pfam	PF06200	7.4E-10	109	139	IPR010399	Tify domain
PROSITE profile	PS51017	13.384	166	208	IPR010402	CCT domain
Pfam	PF06203	5.6E-16	166	208	IPR010402	CCT domain
PROSITE profile	PS50114	9.249	235	283	IPR000679	Zinc finger, GATA-type
SMART	SM00401	2.6E-12	235	288	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	8.08E-12	239	290	No hit	No description
Gene3D	G3DSA:3.30.50.10	3.1E-15	240	281	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	1.38E-14	240	284	No hit	No description
Pfam	PF00320	2.6E-14	241	278	IPR000679	Zinc finger, GATA-type
PROSITE pattern	PS00344	0	241	268	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence Send to blast
MSGHHEAKPY QPRRGPAPAE EEAAAAAPAP LADEVDAEVE AMERYEQEQE QEYEEGEEGE 60 GDEEQEYEGG EGVPMDADAS ATVAAMDPHG EMVPVAGAEA GGGYPHVPSN TLTLSFQGEV 120 YVFESVSAER VQAVLLLLGG RELAPGSGSV PSSSAAYSKK MNFPHRMASL MRFREKRKER 180 NFDKKIRYTV RKEVALRMQR NRGQFTSSKS KAEEATSAIT SSEGSPNWGA VEGRPPSAAE 240 CHHCGINAAS TPMMRRGPDG PRTLCNACGL MWANKGTMRE VTKGPPVPLQ VVPAATNDVQ 300 NGIIEATGGE QQNSAVEEAV SAANGHESQS GIA

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250\|UniProtKB:Q8LAU9}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By drought and salt stresses. {ECO:0000269\|PubMed:19618278}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK068931	0.0	AK068931.1 Oryza sativa Japonica Group cDNA clone:J023003E02, full insert sequence.
GenBank	EU847015	0.0	EU847015.1 Oryza sativa Japonica Group clone KCS277B09 GATA zinc finger protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015622990.1	1e-171	GATA transcription factor 17 isoform X1
Swissprot	Q6Z433	1e-172	GAT17_ORYSJ; GATA transcription factor 17
TrEMBL	A0A0E0JVI6	0.0	A0A0E0JVI6_ORYPU; Uncharacterized protein
STRING	OPUNC02G02970.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4325	38	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51600.2	1e-64	ZIM-LIKE 2

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]