PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC02G03070.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 253aa    MW: 27091.1 Da    PI: 9.1773
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC02G03070.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.26.9e-19122176256
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      rk+ ++t eq + Le+ F+ ++ +s++e+ eLA klgL+ rqV vWFqNrRa+ k
  OPUNC02G03070.1 122 RKKLRLTGEQATLLEDSFRAHNILSHAEKHELAGKLGLSARQVEVWFQNRRARTK 176
                      788899***********************************************98 PP
2HD-ZIP_I/II113.31.5e-36122209188
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 
                      +kk+rl+ eq++lLE+sF++++ L++ +K+ela +Lgl++rqv+vWFqnrRARtk+kq+E d++ L+r++++l+ en+rL++e +eL+
  OPUNC02G03070.1 122 RKKLRLTGEQATLLEDSFRAHNILSHAEKHELAGKLGLSARQVEVWFQNRRARTKLKQTEADCDLLRRWCEHLAGENARLRHELAELH 209
                      69************************************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.9E-1899179IPR009057Homeodomain-like
PROSITE profilePS5007117.135118178IPR001356Homeobox domain
SMARTSM003893.0E-15120182IPR001356Homeobox domain
SuperFamilySSF466892.22E-18121187IPR009057Homeodomain-like
PfamPF000462.5E-16122176IPR001356Homeobox domain
CDDcd000862.16E-13122179No hitNo description
PRINTSPR000312.2E-6149158IPR000047Helix-turn-helix motif
PROSITE patternPS000270153176IPR017970Homeobox, conserved site
PRINTSPR000312.2E-6158174IPR000047Helix-turn-helix motif
SMARTSM003403.9E-11178219IPR003106Leucine zipper, homeobox-associated
PfamPF021834.6E-7178208IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MSSSSLTTTS SMEAGTVTDS VDDLDTRLSL AVGCCPPPPP RRPVVLFGEL FPPQQQKTTT  60
TTTTAAAAAA TGKRDQRGGA EATTRQRRNS KKGRTVRGDD DGDGDRRSPS GGGGGNDDGA  120
SRKKLRLTGE QATLLEDSFR AHNILSHAEK HELAGKLGLS ARQVEVWFQN RRARTKLKQT  180
EADCDLLRRW CEHLAGENAR LRHELAELHR SSSPPVSSHA VATPVVCPSC AHDDKRRLAF  240
ATIGAAAGDM ASN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1120126SRKKLRL
2170178RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0054121e-132AP005412.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0050G13.
GenBankAP0149581e-132AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126101e-132CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624893.13e-89putative homeobox-leucine zipper protein HOX26
SwissprotQ67UX63e-90HOX26_ORYSJ; Putative homeobox-leucine zipper protein HOX26
TrEMBLA0A0E0JVJ70.0A0A0E0JVJ7_ORYPU; Uncharacterized protein
STRINGOPUNC02G03070.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP83153249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16780.19e-32homeobox protein 2