PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC02G03720.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Whirly
Protein Properties Length: 317aa    MW: 33856.7 Da    PI: 10.2603
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC02G03720.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly181.12.1e-561412782139
           Whirly   2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalk 95 
                      v+k+kaal++++++p+f++l+sg  +++++G+++l++ +a+++rkyd++kkq fals+tev++l++l++ esceffhdp++k+s+eG+v+k+l+
  OPUNC02G03720.1 141 VFKGKAALSMHPILPSFSKLESGGSRVNKNGSVMLTFFPAVGQRKYDYSKKQLFALSPTEVGSLISLGPAESCEFFHDPSMKSSHEGQVKKSLS 234
                      9********************************************************************************************* PP

           Whirly  96 vePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
                      v Pl + sG+f+n++v n+l+k+ e++s+P+skaef+v+r++l+
  OPUNC02G03720.1 235 VTPLGNDSGYFLNITVLNNLQKTTERLSLPISKAEFTVMRTALS 278
                      *****************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.102.0E-72128297IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544474.87E-74132317IPR009044ssDNA-binding transcriptional regulator
PfamPF085363.3E-57141275IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005739Cellular Componentmitochondrion
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MRVAFPTQAA CSLLLSSLPF HSLGSVGKRN GGKEKATRCS ASPASFPPPP AAAAAGAAAT  60
LVRFGGAPRL GFMVSTAGAV MLGFVSVISY FGVDEVVGSI VRRVTDLKDA LWSGSLTFQH  120
ALSTFAADEN TSGRKFASYT VFKGKAALSM HPILPSFSKL ESGGSRVNKN GSVMLTFFPA  180
VGQRKYDYSK KQLFALSPTE VGSLISLGPA ESCEFFHDPS MKSSHEGQVK KSLSVTPLGN  240
DSGYFLNITV LNNLQKTTER LSLPISKAEF TVMRTALSFA LPHILGWDQA LTNHQPSPSA  300
ASKPRVERPH PDSEWER
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4kop_A4e-711322948169Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_B4e-711322948169Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_C4e-711322948169Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_D4e-711322948169Single-stranded DNA-binding protein WHY2, mitochondrial
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0615690.0AK061569.1 Oryza sativa Japonica Group cDNA clone:006-311-F08, full insert sequence.
GenBankAK0994790.0AK099479.1 Oryza sativa Japonica Group cDNA clone:J013025B22, full insert sequence.
GenBankAK1047680.0AK104768.1 Oryza sativa Japonica Group cDNA clone:001-039-A03, full insert sequence.
GenBankCT8285100.0CT828510.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA129J03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627387.11e-156single-stranded DNA-binding protein WHY2, mitochondrial
SwissprotD9J0345e-74WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBLA0A0E0JVS70.0A0A0E0JVS7_ORYPU; Uncharacterized protein
STRINGOPUNC02G03720.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30123885
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.17e-73WHIRLY 2