PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC02G03720.2
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Whirly
Protein Properties Length: 279aa    MW: 30435.5 Da    PI: 10.6524
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC02G03720.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly181.61.5e-561032402139
           Whirly   2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalk 95 
                      v+k+kaal++++++p+f++l+sg  +++++G+++l++ +a+++rkyd++kkq fals+tev++l++l++ esceffhdp++k+s+eG+v+k+l+
  OPUNC02G03720.2 103 VFKGKAALSMHPILPSFSKLESGGSRVNKNGSVMLTFFPAVGQRKYDYSKKQLFALSPTEVGSLISLGPAESCEFFHDPSMKSSHEGQVKKSLS 196
                      9********************************************************************************************* PP

           Whirly  96 vePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
                      v Pl + sG+f+n++v n+l+k+ e++s+P+skaef+v+r++l+
  OPUNC02G03720.2 197 VTPLGNDSGYFLNITVLNNLQKTTERLSLPISKAEFTVMRTALS 240
                      *****************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.101.4E-7290259IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544473.3E-7494279IPR009044ssDNA-binding transcriptional regulator
PfamPF085362.4E-57103237IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005739Cellular Componentmitochondrion
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MAHLSVRPTG AAANAGGFPD SSGVFPAAFF SPIPFARLGG QTQRRKREGN AMQRLSRFVP  60
SSSRRVTDLK DALWSGSLTF QHALSTFAAD ENTSGRKFAS YTVFKGKAAL SMHPILPSFS  120
KLESGGSRVN KNGSVMLTFF PAVGQRKYDY SKKQLFALSP TEVGSLISLG PAESCEFFHD  180
PSMKSSHEGQ VKKSLSVTPL GNDSGYFLNI TVLNNLQKTT ERLSLPISKA EFTVMRTALS  240
FALPHILGWD QALTNHQPSP SAASKPRVER PHPDSEWER
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4kop_A2e-71942568169Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_B2e-71942568169Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_C2e-71942568169Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_D2e-71942568169Single-stranded DNA-binding protein WHY2, mitochondrial
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0615690.0AK061569.1 Oryza sativa Japonica Group cDNA clone:006-311-F08, full insert sequence.
GenBankAK0994790.0AK099479.1 Oryza sativa Japonica Group cDNA clone:J013025B22, full insert sequence.
GenBankAK1047680.0AK104768.1 Oryza sativa Japonica Group cDNA clone:001-039-A03, full insert sequence.
GenBankCT8285100.0CT828510.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA129J03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627387.11e-165single-stranded DNA-binding protein WHY2, mitochondrial
SwissprotD9J0344e-74WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBLA0A0E0JVS80.0A0A0E0JVS8_ORYPU; Uncharacterized protein
STRINGORUFI02G04590.11e-166(Oryza rufipogon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.18e-74WHIRLY 2