PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC02G03720.3
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Whirly
Protein Properties Length: 304aa    MW: 32395.2 Da    PI: 10.4425
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC02G03720.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly181.31.9e-561282652139
           Whirly   2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalk 95 
                      v+k+kaal++++++p+f++l+sg  +++++G+++l++ +a+++rkyd++kkq fals+tev++l++l++ esceffhdp++k+s+eG+v+k+l+
  OPUNC02G03720.3 128 VFKGKAALSMHPILPSFSKLESGGSRVNKNGSVMLTFFPAVGQRKYDYSKKQLFALSPTEVGSLISLGPAESCEFFHDPSMKSSHEGQVKKSLS 221
                      9********************************************************************************************* PP

           Whirly  96 vePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
                      v Pl + sG+f+n++v n+l+k+ e++s+P+skaef+v+r++l+
  OPUNC02G03720.3 222 VTPLGNDSGYFLNITVLNNLQKTTERLSLPISKAEFTVMRTALS 265
                      *****************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.102.6E-72116284IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544474.32E-74119304IPR009044ssDNA-binding transcriptional regulator
PfamPF085363.0E-57128262IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005739Cellular Componentmitochondrion
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MRVAFPTQAA CSLLLSSLPF HSLGSVGKRN GGKEKATRCS ASPASFPPPP AAAAAGAAAT  60
LVRFGGAPRL GFMVSTAGAV MLGFVSVISY FGVDEVVGSI VRCLLQSTTK RVGIAENTSG  120
RKFASYTVFK GKAALSMHPI LPSFSKLESG GSRVNKNGSV MLTFFPAVGQ RKYDYSKKQL  180
FALSPTEVGS LISLGPAESC EFFHDPSMKS SHEGQVKKSL SVTPLGNDSG YFLNITVLNN  240
LQKTTERLSL PISKAEFTVM RTALSFALPH ILGWDQALTN HQPSPSAASK PRVERPHPDS  300
EWER
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4kop_A9e-721152814169Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_B9e-721152814169Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_C9e-721152814169Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_D9e-721152814169Single-stranded DNA-binding protein WHY2, mitochondrial
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0615690.0AK061569.1 Oryza sativa Japonica Group cDNA clone:006-311-F08, full insert sequence.
GenBankAK0994790.0AK099479.1 Oryza sativa Japonica Group cDNA clone:J013025B22, full insert sequence.
GenBankAK1047680.0AK104768.1 Oryza sativa Japonica Group cDNA clone:001-039-A03, full insert sequence.
GenBankCT8285100.0CT828510.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA129J03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627387.11e-135single-stranded DNA-binding protein WHY2, mitochondrial
SwissprotD9J0346e-73WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBLA0A0E0JVS90.0A0A0E0JVS9_ORYPU; Uncharacterized protein
STRINGOPUNC02G03720.10.0(Oryza punctata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.11e-73WHIRLY 2