PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC02G04880.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 315aa    MW: 34087.1 Da    PI: 5.049
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC02G04880.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_152.31.3e-16161212458
                      XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 
                      +kr rr+ +NRe+ArrsR+RK+a ++ Le  v++L +eN +L k   +l++  ++
  OPUNC02G04880.1 161 VKRVRRMVSNRESARRSRKRKQAHLADLESQVDQLRGENASLFK---QLTDANQQ 212
                      79**************************************9995...55555554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003387.9E-18158222IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.174160212IPR004827Basic-leucine zipper domain
PfamPF001703.7E-14161210IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.55E-13161213No hitNo description
Gene3DG3DSA:1.20.5.1701.8E-13162213No hitNo description
CDDcd147021.09E-23163213No hitNo description
PROSITE patternPS000360165180IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MKKCPSQLDF EPFFHGGRGD DAEHPLGIFS AADLSGFGFA DWLAVARCLY MLRLEFHVCE  60
IPLIDADQLT PASFFQSTIT GDIPNHIWPQ SQSLNARHPA VSTTIESQSS ICAAASPTSA  120
TNLNMKESQT LGGTSGSDSE SESLLDIEGG PCEQSTNPLD VKRVRRMVSN RESARRSRKR  180
KQAHLADLES QVDQLRGENA SLFKQLTDAN QQFTTSVTDN RILKSDVETL RVKVKMAEDM  240
VARGALSCGL GHLGGLSPAL NPRQACRVPD VLAGLDYAGD DPFTGLSPPE QVQMPGGEVV  300
DGWGWDNHSN GGMSK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174180RRSRKRK
2174181RRSRKRKQ
3176181SRKRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters. {ECO:0000269|PubMed:11133985}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0534730.0AB053473.1 Oryza sativa mRNA for RISBZ4, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623252.11e-175bZIP transcription factor RISBZ4-like isoform X1
SwissprotQ6H5001e-177RSBZ4_ORYSJ; bZIP transcription factor RISBZ4
TrEMBLA0A0E0JW770.0A0A0E0JW77_ORYPU; Uncharacterized protein
STRINGOPUNC02G04880.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20953796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.11e-37basic leucine zipper 9
Publications ? help Back to Top
  1. Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F
    A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif.
    J. Biol. Chem., 2001. 276(17): p. 14139-52
    [PMID:11133985]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]