PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC02G06080.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 151aa MW: 17376.5 Da PI: 6.5264

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC02G06080.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	39.1	1.6e-12	58	105	5	52
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 ++ rr+ +NRe+ArrsR RK+ +++eL v eL N++L el+++ OPUNC02G06080.1 58 RKKRRLVSNRESARRSRVRKQRRLDELSSQVSELRDTNQRLLVELNHM 105 78899************************************9887764 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	3.3E-10	51	105	No hit	No description
SMART	SM00338	3.9E-9	54	118	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.139	56	119	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	8.84E-11	58	109	No hit	No description
Pfam	PF00170	1.4E-9	58	104	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	61	76	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 151 aa Download sequence Send to blast
MDFTSFFLPQ SDAYSHDLST LLDMADPYIS CNGSSITMIP MTEDEANAQP MNHGNDERKK 60 RRLVSNRESA RRSRVRKQRR LDELSSQVSE LRDTNQRLLV ELNHMISKHA RIVRENSQLR 120 EEASDLQRKI SEMEMEEAEV AAAAPRTLKV A

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	70	76	RRSRVRK
2	70	77	RRSRVRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269\|PubMed:26973252}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP005785	0.0	AP005785.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0453H10.
GenBank	AP014958	0.0	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBank	BT129347	0.0	BT129347.1 Oryza sativa clone RRlibA00066 mRNA sequence.
GenBank	BT129389	0.0	BT129389.1 Oryza sativa clone RRlibA00076 mRNA sequence.
GenBank	CP012610	0.0	CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
GenBank	CT835362	0.0	CT835362.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI022L05, full insert sequence.
GenBank	CT835365	0.0	CT835365.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI025K13, full insert sequence.
GenBank	CU406913	0.0	CU406913.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C002J11, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015624742.1	7e-87	basic leucine zipper 43
Swissprot	Q9FMC2	2e-21	BZP43_ARATH; Basic leucine zipper 43
TrEMBL	A0A0E0JWN7	1e-106	A0A0E0JWN7_ORYPU; Uncharacterized protein
STRING	OPUNC02G06080.1	1e-106	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12742	27	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G30530.1	1e-11	basic leucine-zipper 42

Publications ? help Back to Top
Nowak K,Gaj MD Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis. J. Plant Physiol., 2016. 193: p. 119-26 [PMID:26973252] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]