PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC02G08420.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HB-other
Protein Properties Length: 550aa    MW: 57241.8 Da    PI: 6.6169
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC02G08420.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.88.5e-094745121854
                      HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      +Fe+   +yp+ +e+e LA++ gL+ +qV++WF N R +
  OPUNC02G08420.1 474 MFENflRPYPKDSEKEMLAARSGLSRNQVSNWFINARVR 512
                      57766689*****************************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF075263.0E-20244401IPR006563POX domain
PROSITE profilePS5007111.58453516IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.8E-25456527IPR009057Homeodomain-like
CDDcd000867.74E-12456517No hitNo description
SMARTSM003891.9E-7456520IPR001356Homeobox domain
SuperFamilySSF466891.58E-15457525IPR009057Homeodomain-like
PfamPF059201.2E-15473512IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009640Biological Processphotomorphogenesis
GO:0010073Biological Processmeristem maintenance
GO:0010227Biological Processfloral organ abscission
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010371Biological Processregulation of gibberellin biosynthetic process
GO:0090470Biological Processshoot organ boundary specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    Send to blast
MSGSNPSFSQ LGVVDAMNGY FMAASGNSAD VPLFHPAMAA AAPPHDHGGS FGYGDAAAAA  60
MDIGVHFAAA NNLVLASLAT QLFGAAPAAT HGHGDYLGAR TPPEEEMEGG YDVAVGDSSA  120
AVSLACLGQS GDMAAGWCSP SSKKPSCNWS SSNAGVHGSY YYLAGVPEAT GFVSTATPAS  180
ELSLSLCSKS SSDSMLNAGD QCSSAASRSG LTQMSRVVVE PELPLLPYYP QACSRPAAAN  240
FAVVVARSRY AAVAQKVLND AVGCVLGGVA DAADSASGVD SGGSRPSSCS VAGAPSSTVS  300
SNNQLMASSG EHTHVGGGDA SAQRLRSELL TMLQLMDQKY NQCLEEIQST TARFNSLTHA  360
TARAAGMSSS SSSNGGGGGS DICAPFAHRA VSAMYHGLRR RFAGEIMSAA TATARPCRGD  420
SSSAVTGGER ERSWESAFIQ KHWAVQQLRR GEQQCWRPQR GLPEKSVAVL KAWMFENFLR  480
PYPKDSEKEM LAARSGLSRN QVSNWFINAR VRLWKPMIEE MCEELKRSSG GGAGNQALAM  540
EHMNSQDVVS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1098490.0AK109849.1 Oryza sativa Japonica Group cDNA clone:002-148-F06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624855.10.0homeobox protein ATH1 isoform X2
RefseqXP_025878539.10.0homeobox protein ATH1 isoform X2
TrEMBLA0A0E0JXK10.0A0A0E0JXK1_ORYPU; Uncharacterized protein
STRINGOPUNC02G08420.20.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31433365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.12e-52homeobox gene 1