PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC02G08680.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 186aa    MW: 19459.8 Da    PI: 10.0257
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC02G08680.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.53.7e-062378652
                     HHHHHHHHHHHHHHHHHHHCTSCCC............TTS-.STCHHHHHHHHHHHH CS
              HLH  6 nerErrRRdriNsafeeLrellPkas.........kapskK.lsKaeiLekAveYIk 52
                     + +Er RR+++N+ ++ L +l+ + s         +++     +  + L +A eYI+
  OPUNC02G08680.1 23 KTAERIRRNQMNKLYSHLDSLVRSGSdagaaapptQGGP-AaTTRPDRLGEAAEYIR 78
                     679*********************777999999844444.35899999999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.32E-62294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-52394IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0050832Biological Processdefense response to fungus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MEMPPPAGGG GGGGSSGGKP DRKTAERIRR NQMNKLYSHL DSLVRSGSDA GAAAPPTQGG  60
PAATTRPDRL GEAAEYIRRK EERVDMLREK KRELTGGSSS AATPEVEVQH LGSGLHAILV  120
TGGPPNDGAS FHRAVRAVEE AGGQVQNAHF SVVGAKAVYT IHAMVGEGYG GIERVVQRLK  180
EAIRSN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0057566e-77AP005756.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBb0035N08.
GenBankAP0149586e-77AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015688523.13e-78PREDICTED: uncharacterized protein LOC107303503
TrEMBLA0A0E0JXP71e-130A0A0E0JXP7_ORYPU; Uncharacterized protein
STRINGOPUNC02G08680.11e-131(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119872938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.14e-18bHLH family protein