PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC02G08730.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HSF
Protein Properties Length: 286aa    MW: 30900.4 Da    PI: 5.9794
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC02G08730.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind106.81.7e-33121032102
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      F+ k+y++++d++++ +i w +++nsfvv d+  f++++Lp +Fkhsnf+SFvRQLn+YgF+kv+ ++         weF+h sF +g+++ll+
  OPUNC02G08730.1  12 FVAKTYRMVDDPATDGVIAWGRDSNSFVVADPFAFSQTLLPAHFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFAHVSFLRGQTHLLR 96 
                      9****************************************************************999.........***************** PP

                      XXXXXXX CS
     HSF_DNA-bind  96 kikrkks 102
                      +i r++s
  OPUNC02G08730.1  97 RIVRRSS 103
                      ****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467857.62E-338101IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.6E-528101IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.105.1E-378101IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.2E-171235IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.6E-2912101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-175062IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405175IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-176375IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MTAEAGAGVA PFVAKTYRMV DDPATDGVIA WGRDSNSFVV ADPFAFSQTL LPAHFKHSNF  60
SSFVRQLNTY GFRKVDPDRW EFAHVSFLRG QTHLLRRIVR RSSGAGGGAK RKDEAGGGGE  120
VAGDVDEESA MVAMEVARLR REQREIEDRV AAMWRRVQET ERRPKQMLAF LVKVVGDPQV  180
LRRLVDRDNN ATTAADAAVD RARGDHQVKR PRLLLDSTTT DGDHLVTAAA AAAAGDGFYA  240
GGCGPEAADA VDFTGLYTGG DGFSNVVDSG VDYPPAYAFP VVDSGY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-23310120129Heat shock factor protein 1
5d5v_B3e-23310120129Heat shock factor protein 1
5d5v_D3e-23310120129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1064880.0AK106488.1 Oryza sativa Japonica Group cDNA clone:002-105-A02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623571.11e-153heat stress transcription factor C-2a
SwissprotQ6EUG41e-154HFC2A_ORYSJ; Heat stress transcription factor C-2a
TrEMBLA0A0E0JXQ30.0A0A0E0JXQ3_ORYPU; Uncharacterized protein
STRINGOPUNC02G08730.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44713470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.12e-58heat shock transcription factor C1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]