PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC02G10490.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 494aa    MW: 54621.5 Da    PI: 8.1517
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC02G10490.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding322.9e-105187845
                     HHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  8 EdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                     Ede l++  + +G ++W+t+ar ++ gR + qc+ rw 
  OPUNC02G10490.1 51 EDESLIEMTNIYGQNNWETVARAIP-GRNAQQCRVRWK 87
                     9************************.***********6 PP
2Myb_DNA-binding331.4e-1096138145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +++W+ eE+++l+++ + +G++ W + a ++  gRt   +k++w+
  OPUNC02G10490.1  96 KQAWSREEELRLIRVQQIYGNK-WCRMAGHFT-GRTSSAIKEHWR 138
                      799*******************.********9.***********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007172.8E-64392IPR001005SANT/Myb domain
CDDcd001671.71E-94990No hitNo description
Gene3DG3DSA:1.10.10.602.1E-165099IPR009057Homeodomain-like
PfamPF139214.7E-1151107No hitNo description
PROSITE profilePS500908.7695190IPR017877Myb-like domain
SuperFamilySSF466899.54E-2170146IPR009057Homeodomain-like
PROSITE profilePS5129418.46691145IPR017930Myb domain
SMARTSM007171.4E-995143IPR001005SANT/Myb domain
CDDcd001671.88E-898138No hitNo description
Gene3DG3DSA:1.10.10.601.2E-15100146IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MLDPPMVTSI AKEKNYKLAS LARYIIKSSW TSAVLKYLKK EGGVGQQRKV EDESLIEMTN  60
IYGQNNWETV ARAIPGRNAQ QCRVRWKFNL DPAINKQAWS REEELRLIRV QQIYGNKWCR  120
MAGHFTGRTS SAIKEHWRGP MKRKLNSYLA SGLLKKSPGV PENLSVSQSS DSNILQQCDV  180
SSDENQLLSD LRPSLRSKEG VSSKCDGSSA ENQLLSDLRA SLKSKGASSK CDGCSDDNQL  240
LSDLRASLKS KEGASSKCYG SCDENQLLSD LRARLKSKQG ASSKCDGSSD ENQLLSDLQA  300
SLKSKQRTSS KCKQGASSKS KQGTSSKSKQ GFIDLYENTD TSEGESSELI CTERPDHDSG  360
EASQRIRDRL NWRKRARKKL VFLSSPVELK VSAVAESERH LQESKEMSPE VNIVSPPAVL  420
QGFSPEVPSV CEKIVEPPLA DFNQAKNVCS SLETSDPCTL EQHLANVSDL LDMSYIDGLM  480
IIPPAGCPYD DDFI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-21451478110B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1209130.0AK120913.1 Oryza sativa Japonica Group cDNA clone:J023034G08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622738.10.0transcription factor MYB64
TrEMBLA0A0E0JYB00.0A0A0E0JYB0_ORYPU; Uncharacterized protein
STRINGOPUNC02G10490.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP165241011
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.18e-35myb domain protein 3r-4