PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC02G10490.2
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 487aa    MW: 53825.5 Da    PI: 7.8857
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC02G10490.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.25.1e-104480845
                     HHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  8 EdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                     Ede l++  + +G ++W+t+ar ++ gR + qc+ rw 
  OPUNC02G10490.2 44 EDESLIEMTNIYGQNNWETVARAIP-GRNAQQCRVRWK 80
                     9************************.***********6 PP
2Myb_DNA-binding331.4e-1089131145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +++W+ eE+++l+++ + +G++ W + a ++  gRt   +k++w+
  OPUNC02G10490.2  89 KQAWSREEELRLIRVQQIYGNK-WCRMAGHFT-GRTSSAIKEHWR 131
                      799*******************.********9.***********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007173.1E-52685IPR001005SANT/Myb domain
CDDcd001672.26E-94483No hitNo description
PfamPF139214.7E-1144100No hitNo description
Gene3DG3DSA:1.10.10.602.9E-164492IPR009057Homeodomain-like
PROSITE profilePS500908.7694483IPR017877Myb-like domain
SuperFamilySSF466899.17E-2163139IPR009057Homeodomain-like
PROSITE profilePS5129418.46684138IPR017930Myb domain
SMARTSM007171.4E-988136IPR001005SANT/Myb domain
CDDcd001671.83E-891131No hitNo description
Gene3DG3DSA:1.10.10.601.2E-1593139IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MLDPPMVTSI AKEKNYKLAS LARYIIKSSW TSAVLKYLKK EGGEDESLIE MTNIYGQNNW  60
ETVARAIPGR NAQQCRVRWK FNLDPAINKQ AWSREEELRL IRVQQIYGNK WCRMAGHFTG  120
RTSSAIKEHW RGPMKRKLNS YLASGLLKKS PGVPENLSVS QSSDSNILQQ CDVSSDENQL  180
LSDLRPSLRS KEGVSSKCDG SSAENQLLSD LRASLKSKGA SSKCDGCSDD NQLLSDLRAS  240
LKSKEGASSK CYGSCDENQL LSDLRARLKS KQGASSKCDG SSDENQLLSD LQASLKSKQR  300
TSSKCKQGAS SKSKQGTSSK SKQGFIDLYE NTDTSEGESS ELICTERPDH DSGEASQRIR  360
DRLNWRKRAR KKLVFLSSPV ELKVSAVAES ERHLQESKEM SPEVNIVSPP AVLQGFSPEV  420
PSVCEKIVEP PLADFNQAKN VCSSLETSDP CTLEQHLANV SDLLDMSYID GLMIIPPAGC  480
PYDDDFI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-20251405110B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1209130.0AK120913.1 Oryza sativa Japonica Group cDNA clone:J023034G08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622738.10.0transcription factor MYB64
TrEMBLA0A0E0JYB10.0A0A0E0JYB1_ORYPU; Uncharacterized protein
STRINGOPUNC02G10490.10.0(Oryza punctata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.13e-34myb domain protein 3r-4