PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC02G10720.3
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CPP
Protein Properties Length: 537aa    MW: 58804.3 Da    PI: 7.9394
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC02G10720.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR50.34.6e-16182221140
              TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                      k++kgC+C+ks+ClkkYCeCf+a+  Cs++C+C+dCkN e
  OPUNC02G10720.3 182 KHNKGCHCRKSECLKKYCECFQANILCSKNCRCQDCKNFE 221
                      589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5163425.124103222IPR005172CRC domain
SMARTSM011147.6E-18182223IPR033467Tesmin/TSO1-like CXC domain
PfamPF036382.8E-12185220IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MYSARGLIWL IPPNSPPELA SDSSPPTSSP LFPSASTLLS ARVDQRRGLH LPLPREPPPT  60
GAAVLVRGIL AGSMPPVRPA TVAPPPPQKK PAVPVSRPWP MSFTPHPPPP PSVMTVNAAR  120
VYCDGCHCSP CGNKIENENI RKEAIDTILL RNPLAFQPKI ENGPNTITVR KDNSEAMPPI  180
PKHNKGCHCR KSECLKKYCE CFQANILCSK NCRCQDCKNF EGSEERQALV QMKNASDRDH  240
IQEAANFAPN CATGSLGYKS SPAVRRKNYQ ENSLGEQIRS ETQFQPTDHA DVSQLTPSCT  300
GFGGDIASNY QSKSSEMIYR SPLANTIPLI EVNDLVKHAL VACRKAPEAF LTKAGNKVEM  360
QAEKQYQTND EINNDKNKEQ NLKGASLKDI QNKASIDQQN INETGPHLAN SFKDSRPASP  420
GTQALMCDEL DTTFGNDDYR SPFVVPSCDQ DISKLNADQE RIVLTGLRDY LRVLITRGNI  480
NATKFSLETA MELDSRRHHG ATTVISQDKS MSSSCPETLG NNQTSMSNDE QKGKSGG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-1913523247133Protein lin-54 homolog
5fd3_B1e-1913523247133Protein lin-54 homolog
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0047711e-172AP004771.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0413A11.
GenBankAP0149581e-172AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126101e-172CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623618.10.0protein tesmin/TSO1-like CXC 5
TrEMBLA0A0E0JYD50.0A0A0E0JYD5_ORYPU; Uncharacterized protein
STRINGOPUNC02G10720.20.0(Oryza punctata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-66Tesmin/TSO1-like CXC domain-containing protein