PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC02G13570.3
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 186aa    MW: 20303.7 Da    PI: 7.4766
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC02G13570.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.11.2e-064066127
                     CHHHHHHHHHHHHHHHHHHHHHHHCTS CS
              HLH  1 rrrahnerErrRRdriNsafeeLrell 27
                     r++ +  rE+ RRdr+N+ f+eL + l
  OPUNC02G13570.3 40 RKVQKADREKMRRDRLNEQFQELGSTL 66
                     5777889****************8776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.76E-53269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-44069IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MDPRSHQAQE DGFFHPRDSA CPADSSGRTE CKTQGSIVTR KVQKADREKM RRDRLNEQFQ  60
ELGSTLGMAQ LSPEGIRQFI SPHFKCSSLS LLNGDLGDQV LCQQCAGGDP ARDHSASSGT  120
LVIPEHHRLT SSSSITAAVF VGPQRQHVVV CYTLYPDCHP LWPNLPRCSP STTLASSAIS  180
TNGWPS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8326301e-93CT832630.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA020B12, full insert sequence.
GenBankCT8326311e-93CT832631.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA021A12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0JZD81e-135A0A0E0JZD8_ORYPU; Uncharacterized protein